TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136451.10 - phase: 0 /pseudo
         (820 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV767121                                                               97  1e-20
AV780221                                                               95  4e-20
BP060613                                                               51  8e-07
TC13572                                                                45  1e-06
AV780705                                                               45  5e-05
AV426437                                                               32  0.41
BI417256                                                               30  1.5
AV415782                                                               29  3.4
TC15045 similar to AAR25638 (AAR25638) At1g55300, partial (66%)        29  3.4
TC15974 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, p...    27  10.0

>AV767121 
          Length = 525

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 50/129 (38%), Positives = 70/129 (53%), Gaps = 3/129 (2%)
 Frame = +2

Query: 694 FFLGGNDDHKKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRV 753
           F  GG+++  KI  V W  VC  KE+GGLG++ +  FN ALLGK  W  L E +SLW RV
Sbjct: 149 FLWGGSENENKIA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRV 328

Query: 754 LVARYGEEGGRLLDGGRTASAWWRAIATL---HSEAWFGTNVKRSVGNGENIYFWSDVWV 810
           + A+         D     S+WW  I +L    ++ WF + +K+ VG G+   FWS+ W+
Sbjct: 329 IEAQ--------PDHYSCGSSWWNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWL 484

Query: 811 GGVSFKERF 819
           G      RF
Sbjct: 485 GSGLLSARF 511


>AV780221 
          Length = 461

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 44/113 (38%), Positives = 65/113 (56%), Gaps = 4/113 (3%)
 Frame = +3

Query: 703 KKITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARYGEEG 762
           KKI WV W+ VC  K+ GGLGV+ +  FN ALLGKW W +L E++ LWY+VL+ +Y    
Sbjct: 138 KKIAWVKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKNA- 314

Query: 763 GRLLDGGRTASAWWRAIATLHSE----AWFGTNVKRSVGNGENIYFWSDVWVG 811
                  ++AS+WW  + +   E     W    + R +G G  + FW++ W+G
Sbjct: 315 -----IPQSASSWWNDLHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWLG 458


>BP060613 
          Length = 378

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +1

Query: 705 ITWVDWNYVCLSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARYGEEGGR 764
           + W  W+ +   K+ GGLG +     N ALL K +W +L   ++LW ++L A Y      
Sbjct: 73  VHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILKALYFPHHDF 252

Query: 765 LLDGGRTASAW-WRAIATLHSEAWFGTNVKRSVGNGENI 802
           L    RT ++W W ++  LH         +  +G+GE +
Sbjct: 253 LQTTKRTGASWVWSSL--LHGRELLLKQGQWQLGSGETV 363


>TC13572 
          Length = 534

 Score = 45.1 bits (105), Expect(2) = 1e-06
 Identities = 24/73 (32%), Positives = 37/73 (49%), Gaps = 3/73 (4%)
 Frame = -3

Query: 750 WYRVLVARYGEEGGRLLDGGRT-ASAWWRAIATLHS--EAWFGTNVKRSVGNGENIYFWS 806
           W RV++A+YG       DGG T  S+WWR + T       WF   V + + +G +  FW 
Sbjct: 478 WCRVVLAKYG-------DGGCTNISSWWRDVQTAGGGENGWFEEGVHKVLRSGNHTRFWL 320

Query: 807 DVWVGGVSFKERF 819
           + W G    +E++
Sbjct: 319 ENWTGVGILREKY 281



 Score = 24.6 bits (52), Expect(2) = 1e-06
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 731 NSALLGKWSWMVLVEKESL 749
           N ALLGKW W +     SL
Sbjct: 534 NKALLGKWLWRLKTVPNSL 478


>AV780705 
          Length = 524

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 21/44 (47%), Positives = 28/44 (62%)
 Frame = -2

Query: 715 LSKEVGGLGVRRIREFNSALLGKWSWMVLVEKESLWYRVLVARY 758
           LSKE GG+G R +R  N A L + +W VL   E+LW RV+ + Y
Sbjct: 193 LSKEKGGVGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLY 62


>AV426437 
          Length = 303

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 699 NDDHKKITWVDWNYVCLSKEVGGLGVR 725
           +++ +KI W++W  +C  K + GLGV+
Sbjct: 211 DENQRKIAWINWETICKPKWLRGLGVK 291


>BI417256 
          Length = 449

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 473 MDKRMYRHDNSIGFGQWVPNRRVPFEEGFEARRPA 507
           MD+  Y+ ++   FG W  N  +PF + FE+ R A
Sbjct: 74  MDEYYYKRNHVPAFGSWDWNDNLPFTQCFESARQA 178


>AV415782 
          Length = 170

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 767 DGGRTASAWWRAIATLHSEAWFG 789
           DGGR A +WWRA+A    + W G
Sbjct: 105 DGGRVA*SWWRAVA---EDTW*G 46


>TC15045 similar to AAR25638 (AAR25638) At1g55300, partial (66%)
          Length = 1050

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 767 DGGRTASAWWRAIATLHSEAWFG 789
           DGGR A +WWRA+A    + W G
Sbjct: 98  DGGRVA*SWWRAVA---EDTW*G 39


>TC15974 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, partial (5%)
          Length = 742

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +2

Query: 745 EKESLWYRVLVARYGEEGGRLLDGGRTASAWW 776
           E ESLW R+ +   G EGG  ++G  +   +W
Sbjct: 620 ELESLWLRLYIIFVGSEGGNGIEGLMS*ILFW 715


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.361    0.164    0.647 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,527,977
Number of Sequences: 28460
Number of extensions: 276120
Number of successful extensions: 2654
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 2064
length of query: 820
length of database: 4,897,600
effective HSP length: 98
effective length of query: 722
effective length of database: 2,108,520
effective search space: 1522351440
effective search space used: 1522351440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 59 (27.3 bits)