TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136287.2 + phase: 0 
         (365 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV411197                                                               29  1.4
AV768437                                                               29  1.4
TC18611                                                                27  4.1
BP033723                                                               27  4.1
TC18795                                                                27  5.4
TC11690 similar to UP|6PGL_DROME (Q9VZ64) Potential 6-phosphoglu...    27  7.1
TC8881 homologue to UP|ILV5_PEA (O82043) Ketol-acid reductoisome...    27  7.1
CB829109                                                               26  9.2

>AV411197 
          Length = 391

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 18/63 (28%), Positives = 28/63 (43%)
 Frame = +3

Query: 89  ELERLRPEDEQAENIVVNLLDWQVIPAENIIAAFQNSQKTVFAISDNASEAQTFLEALEH 148
           E ER R  + + E I    + +     ENII A  N+ +     +   + A  F+ +L H
Sbjct: 15  ERERERERERERELIQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPH 194

Query: 149 GLD 151
           G D
Sbjct: 195 GYD 203


>AV768437 
          Length = 393

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 12/18 (66%), Positives = 13/18 (71%)
 Frame = +2

Query: 219 ARGLFLVHSECLESKLHC 236
           ARGL  +H ECLE  LHC
Sbjct: 146 ARGLAYLHEECLEWILHC 199


>TC18611 
          Length = 472

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 17/42 (40%), Positives = 21/42 (49%)
 Frame = -3

Query: 167 KEYFDRRTEESNVLNLTKATVTQIQVAGMGDRVCVDLCSLMR 208
           K +F RRT  S+ LNLT+ T              V+LCSL R
Sbjct: 230 KLFFIRRTANSHALNLTRTT----------SSFSVNLCSLCR 135


>BP033723 
          Length = 489

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
 Frame = +1

Query: 167 KEYFDRRTEESNVLNLTKATVTQIQVAGMGDRVCVDLCS-LMRPG 210
           K+   RR   +N + + +  + ++   GMG   C+D+   LM PG
Sbjct: 4   KDRIGRRVSRTNKIRVERGKLAKLDKIGMGIGTCIDVPDRLMLPG 138


>TC18795 
          Length = 755

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 6/54 (11%)
 Frame = +1

Query: 39  NTFIFPSNLP-HLANDWSSIAVICPL-----FASEKEILDAQNKKVATIFDVST 86
           N  +  S LP  LA D  S    CP      FA + E+LDA   K  T+F VST
Sbjct: 370 NVLLPSSLLPLDLALDLGSENKDCPAGLDREFAEDIELLDALRSKYITLFIVST 531


>TC11690 similar to UP|6PGL_DROME (Q9VZ64) Potential
           6-phosphogluconolactonase  (6PGL) , partial (16%)
          Length = 542

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 124 NSQKTVFAISDNASEAQTFLEALEHGLDGIVLKVEDVEPMLELKEYFDR 172
           NS   +  +   A +A     ALE G     L V+ V P  ELK + D+
Sbjct: 66  NSASNIAMVVTGAGKADAVYSALEKGPTDYKLPVQLVSPDGELKWFLDK 212


>TC8881 homologue to UP|ILV5_PEA (O82043) Ketol-acid reductoisomerase,
           chloroplast precursor  (Acetohydroxy-acid
           reductoisomerase) (Alpha-keto-beta-hydroxylacil
           reductoisomerase) , partial (52%)
          Length = 1310

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 83  DVSTPEELERLRPEDEQAENIVVNLLDWQVIPAENIIAAFQNS 125
           D+S P + + +RPE  Q+ N  VN  +W V+P       FQNS
Sbjct: 854 DISVPPDADFVRPELRQSSN*NVN-*NWFVMP-----TPFQNS 964


>CB829109 
          Length = 514

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +2

Query: 247 AYIAVPGGRTSYLSELKSGKEVIVVDQQGRQRIAIVGRVKIESRPLILVEAKTDSDN 303
           +Y  + GG+   L +L S ++ + + + GRQ++ IVG  + E   + +V+   +  N
Sbjct: 188 SYFEIYGGK---LFDLLSDRKKLCMREDGRQQVCIVGLQEFEVFDVQIVKEFIEKGN 349


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,489,214
Number of Sequences: 28460
Number of extensions: 66879
Number of successful extensions: 327
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of query: 365
length of database: 4,897,600
effective HSP length: 91
effective length of query: 274
effective length of database: 2,307,740
effective search space: 632320760
effective search space used: 632320760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)