TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136287.1 + phase: 1 /partial
         (436 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8175 similar to GB|CAB53783.1|5823583|ATH245414 methylenetetra...   292  6e-80
AV766388                                                               95  2e-20
TC12972 weakly similar to UP|Q7PC78 (Q7PC78) Plastid division pr...    30  1.0
BI418313                                                               28  2.3
TC7932                                                                 27  5.1
TC10711                                                                27  6.6
AV765621                                                               27  8.6

>TC8175 similar to GB|CAB53783.1|5823583|ATH245414
           methylenetetrahydrofolate reductase {Arabidopsis
           thaliana;} , partial (26%)
          Length = 787

 Score =  292 bits (748), Expect = 6e-80
 Identities = 143/171 (83%), Positives = 154/171 (89%)
 Frame = +1

Query: 1   AHPDVIGADGLATAEGYQSDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC 60
           AHPD IG++GLAT E YQ+DL YLKSKVDAGADLI+TQLFYDTDIFLKF NDCRQIGITC
Sbjct: 16  AHPDAIGSNGLATPEDYQNDLTYLKSKVDAGADLIITQLFYDTDIFLKFANDCRQIGITC 195

Query: 61  PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIM 120
           PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKI+
Sbjct: 196 PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIL 375

Query: 121 AHGIKTVHLYTLNMEKSALAILTSLGLIEESKISRSLPWRRPTNVFRVKED 171
           AHG KT+HLYTLN+EKSALAIL +LGLIEE+    S+P  RP N  + KED
Sbjct: 376 AHGFKTLHLYTLNLEKSALAILKNLGLIEET----SIPRTRPANAIQAKED 516


>AV766388 
          Length = 846

 Score = 95.1 bits (235), Expect = 2e-20
 Identities = 61/141 (43%), Positives = 78/141 (55%)
 Frame = -1

Query: 18  QSDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFIR 77
           Q+ L   KS V A   L +TQ   + D F    +  RQ G+T P V GIMPIN++ G I 
Sbjct: 585 QNILTTKKSTVAAEPILQITQESDNHDKFPNVGSHIRQTGLTGPGVTGIMPINDFMGMIG 406

Query: 78  MTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIMAHGIKTVHLYTLNMEKS 137
           M G CK K P E+M   EPIKDNE+A +A+ + L  EM    + H      LY++N   S
Sbjct: 405 MCGSCKPKKPTEVMDPFEPIKDNEKADEAHVVPLVCEMSIDNVVHAFHP*PLYSVNSALS 226

Query: 138 ALAILTSLGLIEESKISRSLP 158
           ALAIL  LGLI +    R+ P
Sbjct: 225 ALAILNFLGLIGKPSTRRARP 163


>TC12972 weakly similar to UP|Q7PC78 (Q7PC78) Plastid division protein,
           partial (11%)
          Length = 576

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 375 IVDPVSFNVWKDEAFEIWSRGWASLYPEAD 404
           ++D     +W D A EI  RGW+  YP  D
Sbjct: 125 VLDGEMLQIWTDRAAEIAERGWSYDYPLED 214


>BI418313 
          Length = 574

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 399 LYPEADASRKLVEEVGSSYFLVSLVDNDYANGDLF 433
           L P+ DAS K +E+V     L+  V   Y +GD F
Sbjct: 390 LIPDKDASPKQLEDVSKFLQLIKYVSGSYDSGDGF 494


>TC7932 
          Length = 392

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 208 GALTDYQFMRPRAKDKKLIEEWAVPLKSIEDIYERFRLFCLGKLRTNPWS 257
           G  TD   +R R K +KL++  A+       IY+   + C     T+ WS
Sbjct: 281 GKKTDTGTIRNRTKQEKLLKATAMASSQFTLIYQH*SIHCGSNSPTHSWS 132


>TC10711 
          Length = 620

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 15/39 (38%), Positives = 22/39 (55%)
 Frame = -1

Query: 365 FPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPEA 403
           FP   II P+  +  +FN +  +A E+    WAS+YP A
Sbjct: 251 FPGINIIHPS*NE--TFNCF*IQAAELDLNSWASIYPRA 141


>AV765621 
          Length = 529

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 89  EIMAALEPI--KDNEEAVKAYGIHLGTEMCKKIMAHGIKT 126
           + +++LEP   KD  E  +++ +HLGT+  K   ++ ++T
Sbjct: 319 QTLSSLEPHQPKD*SEGCRSHQVHLGTQSSKPSCSNSVQT 438


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,992,035
Number of Sequences: 28460
Number of extensions: 108994
Number of successful extensions: 463
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of query: 436
length of database: 4,897,600
effective HSP length: 93
effective length of query: 343
effective length of database: 2,250,820
effective search space: 772031260
effective search space used: 772031260
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)