BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136286.5 + phase: 1 /partial
(107 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15311 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, p... 88 2e-19
TC11864 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protein... 79 2e-16
BP085383 28 0.23
TC18597 28 0.23
AV776507 28 0.23
TC19707 similar to UP|ALA9_ARATH (Q9SX33) Potential phospholipid... 28 0.31
TC15936 similar to UP|BAD05166 (BAD05166) Acid phosphatase, part... 27 0.40
TC10470 similar to PIR|S42864|S42864 protein kinase - common ic... 27 0.52
AV770306 27 0.52
TC14247 homologue to UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete 27 0.68
BP058310 26 1.2
TC12495 26 1.2
TC20273 similar to UP|REMO_SOLTU (P93788) Remorin (pp34), partia... 26 1.2
TC10244 similar to UP|Q9M9E5 (Q9M9E5) F3F9.21, partial (4%) 25 1.5
AV428003 25 2.0
AV413692 25 2.0
TC14736 similar to UP|Q9LHS4 (Q9LHS4) Human RAN binding protein ... 25 2.0
BP057603 25 2.0
AV765820 25 2.6
NP459447 plasma membrane intrinsic protein homolog [Lotus japoni... 25 2.6
>TC15311 similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24, partial
(69%)
Length = 966
Score = 88.2 bits (217), Expect = 2e-19
Identities = 42/71 (59%), Positives = 50/71 (70%)
Frame = +3
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
G LP RV+V S+YKGKA L V+P P+F DSG FKIS+EG +LLQF P+ RQYDW
Sbjct: 285 GALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDW 464
Query: 61 NRKQVSYCSFI 71
NRKQV S +
Sbjct: 465 NRKQVFSLSVV 497
>TC11864 weakly similar to UP|Q9LL85 (Q9LL85) DNA-binding protein p24,
partial (30%)
Length = 471
Score = 78.6 bits (192), Expect = 2e-16
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Frame = +3
Query: 2 ELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPS--AGFRQYD 59
+LP RV+V S+YKGKAVL +SP P+F+ DSG K+S+EG +L QF P+ G R YD
Sbjct: 213 DLPPRVYVDHSLYKGKAVLTLSPKPPEFSMLDSGAVKVSREGYILFQFAPAVGGGTRLYD 392
Query: 60 WNRKQV 65
WNRKQV
Sbjct: 393 WNRKQV 410
>BP085383
Length = 527
Score = 28.1 bits (61), Expect = 0.23
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 72 IWCWQHIRYLYSLEFRFYRCCQALHI----ISKRSFFWFI 107
I+C + +Y L+F FY C LHI ++ SF F+
Sbjct: 121 IYCVEKSFKVYILQFTFYPSCHGLHISCN*VTAESFTLFV 2
>TC18597
Length = 550
Score = 28.1 bits (61), Expect = 0.23
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = +3
Query: 59 DWNRKQVSYCSFIIWCWQHIRYLYSLEFRFYRCC 92
D+N + ++CW H+R SL F F C
Sbjct: 300 DYNFTFLKQSQMYLYCWLHVRIFESLLFSFLAFC 401
>AV776507
Length = 462
Score = 28.1 bits (61), Expect = 0.23
Identities = 13/40 (32%), Positives = 16/40 (39%)
Frame = -1
Query: 66 SYCSFIIWCWQHIRYLYSLEFRFYRCCQALHIISKRSFFW 105
SY S W W + +E Y CC L + K F W
Sbjct: 138 SYFSPSTWEW*TVELEMMMEIHVYLCCYLLSRLQKYIFVW 19
>TC19707 similar to UP|ALA9_ARATH (Q9SX33) Potential
phospholipid-transporting ATPase 9 (Aminophospholipid
flippase 9) , partial (4%)
Length = 502
Score = 27.7 bits (60), Expect = 0.31
Identities = 12/38 (31%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Frame = -3
Query: 71 IIWCWQHIRYLYSLEF--RFYRCCQALHIISKRSFFWF 106
+IW W + + S+ F F+ C Q H+ +FWF
Sbjct: 467 LIW-WSSVLFFTSISFILSFFGCVQYHHLFLSEIWFWF 357
>TC15936 similar to UP|BAD05166 (BAD05166) Acid phosphatase, partial (88%)
Length = 1324
Score = 27.3 bits (59), Expect = 0.40
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 4 PARVHVSRSVYKGKAVLV--VSPVLPKFTSSDSGT 36
P +VH+++ Y GKAV++ V+P P +S GT
Sbjct: 281 PQQVHITQGDYDGKAVIISWVTPDEPGSSSVQYGT 385
>TC10470 similar to PIR|S42864|S42864 protein kinase - common ice plant
(fragment) {Mesembryanthemum crystallinum;} , partial
(16%)
Length = 621
Score = 26.9 bits (58), Expect = 0.52
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 72 IWCWQHIRYLYSLEFRFYRCCQALHI 97
I+C + +Y L+F FY C LHI
Sbjct: 452 IYCVEKSFKVYILQFTFYLSCHGLHI 529
>AV770306
Length = 176
Score = 26.9 bits (58), Expect = 0.52
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 60 WNRKQVSYCSFIIWCWQHIRYLYSLEFRFYRCCQALHIISKRSFFW 105
W+R V +W H Y + + RFY C L I+ +FFW
Sbjct: 144 WHRFPVMKLIVWLWAMPHC-YHFVPK*RFYLCQCQLKIMKTIAFFW 10
>TC14247 homologue to UP|Q9SLQ6 (Q9SLQ6) Actin isoform B, complete
Length = 1656
Score = 26.6 bits (57), Expect = 0.68
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +3
Query: 28 KFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNRK 63
+F SS S FK+ K LML F P + +W R+
Sbjct: 102 RFASSFSLQFKVRKRWLMLRIFNPLFATMELEWLRR 209
>BP058310
Length = 480
Score = 25.8 bits (55), Expect = 1.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 40 SKEGLMLLQFVPSAGFRQYDWNRKQVSYCS----FIIWCWQHI 78
S++GL+L +G + D +Q+ C +WCW HI
Sbjct: 109 SEKGLVL------SGAEEMDLTDQQLKPCKCGYEICVWCWHHI 219
>TC12495
Length = 537
Score = 25.8 bits (55), Expect = 1.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 70 FIIWCWQHIRYLYSLEFRFY 89
FI W + +YLY L+F FY
Sbjct: 388 FITWSFLFSKYLYILDFIFY 329
>TC20273 similar to UP|REMO_SOLTU (P93788) Remorin (pp34), partial (64%)
Length = 569
Score = 25.8 bits (55), Expect = 1.2
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -2
Query: 3 LPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNR 62
LP + +S S + +L SP++P+F S + LQ +PS F R
Sbjct: 496 LPCELRLSCSSFFHHILLSFSPIVPQFFSVE-------------LQELPSYCFPMQQHQR 356
Query: 63 KQVSYCSFIIWCWQH 77
CS ++C+ H
Sbjct: 355 DSFELCS--LFCFFH 317
>TC10244 similar to UP|Q9M9E5 (Q9M9E5) F3F9.21, partial (4%)
Length = 554
Score = 25.4 bits (54), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 56 RQYDWNRKQVSYCSFIIWCWQHIRYLYSLEFR 87
R YD ++SYC +++WC + +RY + +R
Sbjct: 446 RLYD----RISYC-WLLWCIKMLRYQFPFYYR 526
>AV428003
Length = 220
Score = 25.0 bits (53), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = -3
Query: 78 IRYLYSLEFRFYRCCQALHIIS 99
IRY +LE ++ C LH++S
Sbjct: 191 IRYSLNLEIHYFFKCPVLHVVS 126
>AV413692
Length = 325
Score = 25.0 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Frame = -1
Query: 86 FRFYRCCQALHIIS-----KRSFFWF 106
FR +RCCQ + S K F+WF
Sbjct: 244 FRKFRCCQRVGASSNQNVVKEKFYWF 167
>TC14736 similar to UP|Q9LHS4 (Q9LHS4) Human RAN binding protein 16-like,
partial (5%)
Length = 757
Score = 25.0 bits (53), Expect = 2.0
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +2
Query: 60 WNRKQVSYCSFIIWCWQHIRYLYSLEFRFYRCCQALHIISKRSFFWF 106
W ++ ++ SF W +++ +YSL F C + S+ W+
Sbjct: 257 WKKRPLAISSF----WSYVKEMYSL*LWFMEC-------GRSSYLWY 364
>BP057603
Length = 538
Score = 25.0 bits (53), Expect = 2.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 17 KAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQF 49
KA++ V + P ++G FK+ K+G ++ QF
Sbjct: 320 KALMQVRFLYPNSNLEETGPFKVVKDGKLVDQF 222
>AV765820
Length = 394
Score = 24.6 bits (52), Expect = 2.6
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = +1
Query: 70 FIIWCWQHIRYL 81
FI WCW+H Y+
Sbjct: 25 FICWCWRHHIYM 60
>NP459447 plasma membrane intrinsic protein homolog [Lotus japonicus]
Length = 578
Score = 24.6 bits (52), Expect = 2.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 67 YCSFIIWCWQHI 78
+CS +WCW H+
Sbjct: 430 WCSHELWCWLHL 395
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.331 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,294,479
Number of Sequences: 28460
Number of extensions: 32602
Number of successful extensions: 335
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of query: 107
length of database: 4,897,600
effective HSP length: 83
effective length of query: 24
effective length of database: 2,535,420
effective search space: 60850080
effective search space used: 60850080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)
Medicago: description of AC136286.5