TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136286.2 - phase: 0 
         (251 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16023                                                               174  1e-44
TC16570 similar to UP|Q9LR03 (Q9LR03) F10A5.18, partial (18%)         144  2e-35
AV415391                                                               79  6e-16
BP066498                                                               76  6e-15
BP042912                                                               43  5e-05
TC9087 homologue to UP|AAR83868 (AAR83868) 60S ribosomal protein...    30  0.52
TC10391                                                                26  5.7
BP036801                                                               26  5.7
TC11538                                                                25  9.7

>TC16023 
          Length = 894

 Score =  174 bits (442), Expect = 1e-44
 Identities = 103/253 (40%), Positives = 135/253 (52%), Gaps = 5/253 (1%)
 Frame = +2

Query: 1   MEVMPVPRVMPDMLLLPTGNVIILNGAANGTAGWENAANPVLYPVLYKPGLDNPFMKFEL 60
           ME MP PR++ DML+LP GN++I+NGA +G AG++NA N  L P LY P       +F +
Sbjct: 41  MEYMPEPRLLHDMLILPNGNILIINGAKHGCAGYDNARNASLEPYLYSP-KKRLGKRFRV 217

Query: 61  LAPASTPRMYHSSAVLLPDGRILVGGSNPHRLYDF-QAKYPTELSLDAYYPDYLRPELDT 119
           L      RMYHSSA LLPDGR+LV G NPH  Y F    YPTEL L A+ P Y+     +
Sbjct: 218 LKSTKIARMYHSSATLLPDGRVLVAGGNPHGRYSFHNVAYPTELRLQAFVPHYMHRRYHS 397

Query: 120 LRPVIVAVEV----VNSTLSYESLFSVSFLLREVKDVNRIRVSMVAPSFTTHSFAMNQRL 175
            RP  + V+         + Y + F V FL+   +  N +  S+ AP FTTHS AMNQR+
Sbjct: 398 WRPSNLTVKSGGGGERGVIGYGAEFRVRFLV-GTRPSNEVAFSVYAPPFTTHSVAMNQRM 574

Query: 176 LFLEVTALEEVVNSMQDQNFGEFGFGSSLGPGKIANSVYKATVRGPPSLNVAPPGYYMLF 235
           L L   ++        D                       A +  PPS  VAP GYY+L 
Sbjct: 575 LKLRCRSMVRSSGGWVD-----------------------AVLEAPPSPRVAPSGYYLLT 685

Query: 236 VIHVGIPSVATWV 248
           V++ GIPSV+ W+
Sbjct: 686 VVNGGIPSVSQWI 724


>TC16570 similar to UP|Q9LR03 (Q9LR03) F10A5.18, partial (18%)
          Length = 794

 Score =  144 bits (362), Expect = 2e-35
 Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
 Frame = +3

Query: 57  KFELLAPASTPRMYHSSAVLLPDGRILVGGSNPHRLYDFQA-KYPTELSLDAYYPDYLRP 115
           +FEL  P  TP MYHS+AVLL DGR+LV GSNPH  Y+F +  +PTELSL+A+ P YL P
Sbjct: 33  QFELQNPTKTPWMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSLEAFSPPYLEP 212

Query: 116 ELDTLRPVIVA-VEVVNSTLSYESLFSVSFLLREVKDV-NRIRVSMVAPSFTTHSFAMNQ 173
           +   +RP IV+      + L Y     + F +  +    + + ++M+AP F THSF+MNQ
Sbjct: 213 QYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPPFNTHSFSMNQ 392

Query: 174 RLLFLEVTALEEVVNSMQDQNFGEFGFGSSLGPGKIANSVYKATVRGPPSLNVAPPGYYM 233
           RLL LE   L++V                         S+++  V  P S  +APPG+Y+
Sbjct: 393 RLLVLEPNGLKDV-----------------------GESIHEVEVTAPGSATLAPPGFYL 503

Query: 234 LFVIHVGIPSVATWVHV 250
           +FV+H GIPS   WV +
Sbjct: 504 VFVVHQGIPSEGIWVQI 554


>AV415391 
          Length = 138

 Score = 79.3 bits (194), Expect = 6e-16
 Identities = 35/39 (89%), Positives = 38/39 (96%)
 Frame = +2

Query: 1  MEVMPVPRVMPDMLLLPTGNVIILNGAANGTAGWENAAN 39
          ME MP+PRVMPDM+LLPTGNV+ILNGAANGTAGWENAAN
Sbjct: 20 METMPIPRVMPDMILLPTGNVMILNGAANGTAGWENAAN 136


>BP066498 
          Length = 512

 Score = 75.9 bits (185), Expect = 6e-15
 Identities = 49/141 (34%), Positives = 71/141 (49%), Gaps = 2/141 (1%)
 Frame = -1

Query: 112 YLRPELDTLRPVIVAVEVVNSTLSYESLFSVSFLLREVKDV--NRIRVSMVAPSFTTHSF 169
           YL  + D   P+I   E     L Y   F   F +++  ++  N I+V+M  P FTTH F
Sbjct: 512 YLDVDFDIYXPMINEDESTKE-LRYGQFFETVFAVQDGAELTMNDIKVTMYFPPFTTHGF 336

Query: 170 AMNQRLLFLEVTALEEVVNSMQDQNFGEFGFGSSLGPGKIANSVYKATVRGPPSLNVAPP 229
           +M QRLL L++  L  +V+S                PG     +Y+  +  PP+  +APP
Sbjct: 335 SMGQRLLVLKLDKL--MVDS----------------PG-----LYRVRIAAPPNSVIAPP 225

Query: 230 GYYMLFVIHVGIPSVATWVHV 250
           GYY+LFV H G+P    WVH+
Sbjct: 224 GYYLLFVNHRGVPGKGMWVHI 162


>BP042912 
          Length = 223

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -3

Query: 226 VAPPGYYMLFVIHVGIPSVATWVHV 250
           +AP GYY+LFV+H G+PS  +WV V
Sbjct: 209 IAPAGYYLLFVVHAGVPSTGSWVQV 135


>TC9087 homologue to UP|AAR83868 (AAR83868) 60S ribosomal protein L12,
           complete
          Length = 787

 Score = 29.6 bits (65), Expect = 0.52
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 14  LLLPTGNVIILNGAANGTAGWENAANPVLYPVLYKPGLDNP 54
           LLL    ++ +N AANG AG EN  N     + ++P L +P
Sbjct: 521 LLLQILRILAVNSAANGDAGPENLLNGAGEILRHRPRLHHP 399


>TC10391 
          Length = 565

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 113 LRPELDTLRPVIVAVEVVNSTLSYESLFSVSFLLREVKDVNRIR 156
           LRP +   RP+ V+   +  TLSY+  +S +  + E+    RIR
Sbjct: 298 LRPRVMVTRPLEVSDMSITQTLSYQ--WSGNLCINEMNTATRIR 173


>BP036801 
          Length = 540

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 59  ELLAPASTPRMYHSSAVLLPDGRILVGG 86
           EL    ++PR Y S+ +L PDGRI+V G
Sbjct: 457 ELPQNLTSPRWYASNQIL-PDGRIIVVG 537


>TC11538 
          Length = 542

 Score = 25.4 bits (54), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = -3

Query: 68  RMYHSSAVLLPDGRILVGGSNPHRLYDFQ 96
           R Y     LLP   +L G SNPH  Y+ Q
Sbjct: 420 RSYWKHRWLLPHNILLPGISNPHIQYNLQ 334


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,024,333
Number of Sequences: 28460
Number of extensions: 52365
Number of successful extensions: 255
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of query: 251
length of database: 4,897,600
effective HSP length: 88
effective length of query: 163
effective length of database: 2,393,120
effective search space: 390078560
effective search space used: 390078560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)