BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136286.10 + phase: 0
(449 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15286 similar to UP|Q7XYY0 (Q7XYY0) AKIN gamma, partial (65%) 147 3e-36
TC9136 homologue to UP|Q7XYY0 (Q7XYY0) AKIN gamma, partial (17%) 55 3e-08
TC8442 similar to UP|UMP3_ARATH (Q9LEV3) Protein At5g10860, mito... 37 0.007
AV408212 32 0.21
TC14295 similar to UP|O03990 (O03990) RAD23, isoform I, partial ... 32 0.21
TC12893 similar to GB|AAP37728.1|30725412|BT008369 At3g03720 {Ar... 32 0.28
CN825556 31 0.36
AV418552 30 0.81
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 30 1.1
TC15010 weakly similar to UP|SR40_YEAST (P32583) Suppressor prot... 28 2.4
TC11682 homologue to UP|Q7PZ83 (Q7PZ83) AgCP9540 (Fragment), par... 28 2.4
AI967777 28 3.1
TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precu... 28 3.1
AW720511 28 3.1
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 27 5.3
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 27 5.3
TC10144 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, part... 27 5.3
TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber... 27 5.3
AV409641 27 5.3
TC16266 similar to UP|Q8VZI2 (Q8VZI2) AT4g33700/T16L1_190, parti... 27 5.3
>TC15286 similar to UP|Q7XYY0 (Q7XYY0) AKIN gamma, partial (65%)
Length = 877
Score = 147 bits (371), Expect = 3e-36
Identities = 90/249 (36%), Positives = 139/249 (55%)
Frame = +3
Query: 41 ETLTDSFAKIPVSSFPGVPGGKVVEILADTPVGEAVKILSESNILAAPVKDPDAGIGSDW 100
E L F IPVS+FP P + +EI +D + EAVKIL+ N+ +APV D DA + W
Sbjct: 123 EKLNACFESIPVSAFPLPPLNQEIEIKSDATLAEAVKILARHNVFSAPVVDVDAPEDASW 302
Query: 101 RDRYLGIIDYSAIILWVMESAELAAVALSAGTATAAGVGAGTVGALGAIALGATGPAAIA 160
DRY+GI++++ I++W++ +E ++ S T T+A AIA A G
Sbjct: 303 IDRYIGIVEFAGIVVWILHQSEPSSPR-SPSTPTSAS----------AIAAKANGITFAL 449
Query: 161 GLTAAAVGAAVVGGVAADKTMAKDAPQAANNLGEDFYKVILQEEPFKSTTVRSILKSYRW 220
L A ++G+A A A N F++ + E +K+T VR I ++RW
Sbjct: 450 ELEALSLGSA--------------ATTAGN-----FFEDLTSSELYKNTKVRDISGTFRW 572
Query: 221 APFVPVAKNSAMLTVLLLLSKYRLRNVPVIEPGKADIVNFITQSAVIQGLEGCRGRDWFD 280
APF+ + ++++ LT+LLLLSKY++++VPV + A I N IT SAVI L C G WF+
Sbjct: 573 APFLALERSNSFLTMLLLLSKYKMKSVPVADLSAARIGNIITXSAVIHMLAECVGLQWFE 752
Query: 281 CIAARPMAD 289
A+ +++
Sbjct: 753 SWGAKEISE 779
>TC9136 homologue to UP|Q7XYY0 (Q7XYY0) AKIN gamma, partial (17%)
Length = 486
Score = 54.7 bits (130), Expect = 3e-08
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +3
Query: 382 ITCKPDATLQSVIHTLASQSIHRIYTVNGQDQVVGVITLRDVISCFITEPDYHFDDYY 439
ITCK T++ +I L + IHR+Y V+ + G+ITLRD+IS + EP +F D++
Sbjct: 3 ITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIISRLVHEPHGYFGDFF 176
>TC8442 similar to UP|UMP3_ARATH (Q9LEV3) Protein At5g10860, mitochondrial
precursor, partial (83%)
Length = 1023
Score = 37.0 bits (84), Expect = 0.007
Identities = 34/152 (22%), Positives = 72/152 (47%), Gaps = 9/152 (5%)
Frame = +3
Query: 201 LQEEPFKSTTVRSILK--------SYRWAPFVPVAKNSAMLTVLLLLSKYRLRNVPVIEP 252
++E F+STT+ ILK S+ W + + +++ + + V++P
Sbjct: 243 IEEHGFESTTIADILKAKGKGADGSWLWC-----TTEDTVYEAVKSMTQNNVGALVVVKP 407
Query: 253 GKA-DIVNFITQSAVIQGLEGCRGRDWFDCIAARPMADLGLPFMSADKVISIQSNELILE 311
+ I IT+ ++ + +GR + +G +K+I++ + +L
Sbjct: 408 AEEKSIAGIITERDYLRKII-VQGR-------SSKSTKVGDIMTEENKLITVTPDTRVLR 563
Query: 312 AFKIMRDNQIGGLPVVEGPAKTIVGNLSIRDI 343
A ++M DN+I +PV++G K ++G +SI D+
Sbjct: 564 AMQLMTDNRIRHIPVIDG--KGMLGMVSIGDV 653
>AV408212
Length = 362
Score = 32.0 bits (71), Expect = 0.21
Identities = 20/53 (37%), Positives = 25/53 (46%)
Frame = -3
Query: 123 LAAVALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGV 175
+A VA+ A A A V G + ATG A A + AAA AV+ GV
Sbjct: 162 VAVVAVIAAAAAAVAAVVVAVAVAGELHASATGSVASACVAAAAAVDAVIAGV 4
>TC14295 similar to UP|O03990 (O03990) RAD23, isoform I, partial (29%)
Length = 622
Score = 32.0 bits (71), Expect = 0.21
Identities = 22/57 (38%), Positives = 27/57 (46%), Gaps = 6/57 (10%)
Frame = -1
Query: 128 LSAGTATAAGVGAGTVGALGAIALGATGPAAIAGL------TAAAVGAAVVGGVAAD 178
+ AG AGV AG GA A GA+G G+ T VGAA+V G A+
Sbjct: 565 IGAGAGDGAGVAAGAAGA--AAVTGASGAPVAVGVGSGTDTTGFEVGAALVCGALAE 401
>TC12893 similar to GB|AAP37728.1|30725412|BT008369 At3g03720 {Arabidopsis
thaliana;}, partial (30%)
Length = 564
Score = 31.6 bits (70), Expect = 0.28
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 122 ELAAVALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAV 171
+L+AV L G A +GAG +G +A GPA + L A + AA+
Sbjct: 51 KLSAVDL-VGIGVGATIGAGVYILIGTVAREQAGPALVISLLIAGIAAAL 197
>CN825556
Length = 655
Score = 31.2 bits (69), Expect = 0.36
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = -1
Query: 117 VMESAELAAVALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVA 176
V++ + V + AGT A GAG GA A G A+A A AV VV +A
Sbjct: 616 VVQERVVELVVVEAGTLAVALAGAGAGAGAGAEAGAEAGAEAVAVAVAVAVVVKVVVALA 437
>AV418552
Length = 386
Score = 30.0 bits (66), Expect = 0.81
Identities = 35/131 (26%), Positives = 53/131 (39%)
Frame = -1
Query: 56 PGVPGGKVVEILADTPVGEAVKILSESNILAAPVKDPDAGIGSDWRDRYLGIIDYSAIIL 115
P V +VVE A V V + + AAPV +G++ +++
Sbjct: 365 PSVDAEEVVETAAAARVVAGVVCVDVV*VAAAPV--------------VVGVVQ--VVVV 234
Query: 116 WVMESAELAAVALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGV 175
+ A + AV ++A VGA V +GA A+ A+ A AG+ V V
Sbjct: 233 GAVLVAAVGAV*VAAARVV---VGAVQVAVVGAAAVAASEEEAAAGVENMIASVGAVALV 63
Query: 176 AADKTMAKDAP 186
AA MA+ P
Sbjct: 62 AALDWMAQMQP 30
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Frame = -2
Query: 129 SAGTATAAGVGAG------TVGALGAIALGATGPAAIAG---LTAAAVGAAVVGGVAADK 179
+ G A AGV AG V A G +A G G AA G + A VGAA G A +
Sbjct: 310 AGGEAEGAGVAAGGVVVGAGVAAGGGVAGGGAGAAAGGGGGVVVGACVGAA--PGACATQ 137
Query: 180 TMAKDAPQAANN 191
+A+ +P+ NN
Sbjct: 136 EVAR-SPKIRNN 104
Score = 29.3 bits (64), Expect = 1.4
Identities = 26/62 (41%), Positives = 31/62 (49%)
Frame = -2
Query: 128 LSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMAKDAPQ 187
+ AG A GVGA A+G +GA G A AG+ AA G V GVAA +A
Sbjct: 376 IGAGGEEAEGVGAPVGEAVG---VGAGGEAEGAGV--AAGGVVVGAGVAAGGGVAGGGAG 212
Query: 188 AA 189
AA
Sbjct: 211 AA 206
>TC15010 weakly similar to UP|SR40_YEAST (P32583) Suppressor protein SRP40,
partial (5%)
Length = 1439
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/58 (18%), Positives = 29/58 (49%)
Frame = +3
Query: 370 SASYESGKVTRPITCKPDATLQSVIHTLASQSIHRIYTVNGQDQVVGVITLRDVISCF 427
S+S + I C P ++L +V+ + ++ ++ + +VG++T +++ F
Sbjct: 1074 SSSVRMVRKAEAIVCHPKSSLVAVMIQAIAHRVNYLWVIEDDCSLVGIVTFSNILKVF 1247
>TC11682 homologue to UP|Q7PZ83 (Q7PZ83) AgCP9540 (Fragment), partial (11%)
Length = 822
Score = 28.5 bits (62), Expect = 2.4
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 113 IILWVMESAELAAVALSAGTATAAG-VGAGTVGALGAIALGATGPAAIAGLTAAAVGAAV 171
++++V+ AE+ A A G+ + VGA VG + G G T A V AV
Sbjct: 311 VVVFVVGGAEIDARATLQGSEESRSHVGADPVGHSVELVAGHDGAT-----TVAVVAVAV 147
Query: 172 VGGV 175
VGGV
Sbjct: 146 VGGV 135
>AI967777
Length = 461
Score = 28.1 bits (61), Expect = 3.1
Identities = 21/78 (26%), Positives = 32/78 (40%)
Frame = +2
Query: 110 YSAIILWVMESAELAAVALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGA 169
+ ++L + +A A+ G A AG + A G + +GA AAA+ A
Sbjct: 80 FQVVLLDMAVKPTVALRAILVGGIAAFAKVAGAMKAAGGVKIGAA---------AAAMTA 232
Query: 170 AVVGGVAADKTMAKDAPQ 187
A + K KDA Q
Sbjct: 233 AATAAMTGSKQEEKDAAQ 286
>TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precursor,
partial (43%)
Length = 1038
Score = 28.1 bits (61), Expect = 3.1
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -1
Query: 129 SAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVA 176
S T AG GAG L +A G A G++A AA GGVA
Sbjct: 591 SETTGANAGAGAGAGDLLFTLAGAGAGEVAGTGVSAGGGVAAGGGGVA 448
>AW720511
Length = 477
Score = 28.1 bits (61), Expect = 3.1
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Frame = -3
Query: 122 ELAAVALSAGTATAAGV------------GAGTVGALGAIALGATGPAAIAGLTAAAVGA 169
E+ A A+ G T GV GA + A ALGA+G +AI + A
Sbjct: 475 EVMARAMHYGMVTMPGVFTPTEAFQAIRLGASALKFFPASALGASGISAIRAVLPAQTLV 296
Query: 170 AVVGGVA-ADKTMAKDAPQAANNLGEDFYK 198
VGGV+ D K LG +K
Sbjct: 295 GAVGGVSEKDFAGYKSVGVTVFGLGSSLFK 206
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 27.3 bits (59), Expect = 5.3
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 124 AAVALSAGTATAAGVGAGTVG--ALGAIAL-GATGPAAIAGLTAAAVGAAVVGGVAAD 178
AAVA AG A A GVGA G A G +++ G AA G V GV D
Sbjct: 330 AAVAGCAGEAVAGGVGAAGAGPDAAGPVSVWDGDGEVGEGVEDEAAAGEDWVAGVGLD 157
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 27.3 bits (59), Expect = 5.3
Identities = 30/102 (29%), Positives = 38/102 (36%), Gaps = 6/102 (5%)
Frame = -3
Query: 125 AVALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMA-- 182
A + G A AAG V A LGA L AAA G A+ G+ D A
Sbjct: 672 AAGFALGLAAAAGFALAVVLVAAAFDLGA---GLALALVAAAAGLALALGLGLDLAAAGC 502
Query: 183 ----KDAPQAANNLGEDFYKVILQEEPFKSTTVRSILKSYRW 220
A A EDF L+E F T+ + ++W
Sbjct: 501 GFFLAAAGLEAAAAAEDFADGSLKEF-FTFTSFPAATSFFKW 379
>TC10144 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (8%)
Length = 600
Score = 27.3 bits (59), Expect = 5.3
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 14/70 (20%)
Frame = +2
Query: 120 SAELAAVALSAGTATAAG-------------VGAGTVGALGAIALGATGPAAIAGLTAAA 166
+A AA A + GTAT AG G A+ AI+ A P A A + +
Sbjct: 98 TAATAAGAAARGTATTAGAATAGSATAASTSAATGISTAISAISYAAVPPPAAAATISTS 277
Query: 167 VG-AAVVGGV 175
+G + VGG+
Sbjct: 278 LGIRSKVGGI 307
>TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber hypocotyls
(Arabinogalactan protein), partial (26%)
Length = 795
Score = 27.3 bits (59), Expect = 5.3
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 132 TATAAGVGAGT-VGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAA 177
T TAAG G T A G G TG +AG A AV G VAA
Sbjct: 339 TGTAAGGGEATGTAAGGGEVTGVTG-VVVAGAGAVAVEGDAAGVVAA 202
>AV409641
Length = 414
Score = 27.3 bits (59), Expect = 5.3
Identities = 18/53 (33%), Positives = 23/53 (42%), Gaps = 1/53 (1%)
Frame = -1
Query: 132 TATAAGVGAGTVGAL-GAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMAK 183
T A G+G GT+GAL G +G P LT +V+ V T K
Sbjct: 174 TTGAVGLGPGTMGALEGLDTIGPRAPDLSVNLTVGVFWTSVLDTVVTFDTGVK 16
>TC16266 similar to UP|Q8VZI2 (Q8VZI2) AT4g33700/T16L1_190, partial (63%)
Length = 1193
Score = 27.3 bits (59), Expect = 5.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = +2
Query: 411 QDQVVGVITLRDVISCFI-----TEPDYHFDD 437
+++ VG+IT+ DVI + E D+HF+D
Sbjct: 815 EEEAVGIITMEDVIEELLQEEIFDETDHHFED 910
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,927,199
Number of Sequences: 28460
Number of extensions: 65816
Number of successful extensions: 377
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of query: 449
length of database: 4,897,600
effective HSP length: 93
effective length of query: 356
effective length of database: 2,250,820
effective search space: 801291920
effective search space used: 801291920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC136286.10