TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136142.5 - phase: 0 
         (166 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19832 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Ar...   215  4e-57
TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial...    30  0.16
TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine ...    28  0.81
TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S1...    28  1.1
TC8132 similar to UP|Q7XAD5 (Q7XAD5) Ap26, partial (15%)               26  3.1
BP060986                                                               26  4.0
AV414553                                                               26  4.0
AV772546                                                               25  5.2
TC11634 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Ar...    25  5.2
BP075520                                                               25  6.9
BP057255                                                               25  9.0

>TC19832 similar to GB|AAO39903.1|28372842|BT003675 At5g67590 {Arabidopsis
           thaliana;}, partial (75%)
          Length = 530

 Score =  215 bits (547), Expect = 4e-57
 Identities = 100/125 (80%), Positives = 112/125 (89%)
 Frame = +1

Query: 1   MTNILLRTASRGGSLRATLIRRFSTDALVESKPGEIGLVSGIPQEHLRRRVLIYSPARTA 60
           M + + R  SRGG+LRATL R+FSTDALVE+KPGEIG+VSGIPQEHL RRV+IYSPARTA
Sbjct: 79  MASTVQRAVSRGGALRATLTRQFSTDALVEAKPGEIGMVSGIPQEHLHRRVVIYSPARTA 258

Query: 61  GQQGSGNVGRWRINFLSTQKWENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERHGW 120
            QQGSG VGRW+INFLSTQKWENPLMGWTSTGDPY+HVGDSAL FD+ EAAK FAE+HGW
Sbjct: 259 SQQGSGKVGRWKINFLSTQKWENPLMGWTSTGDPYAHVGDSALSFDSAEAAKAFAEKHGW 438

Query: 121 EYVAE 125
           EYV +
Sbjct: 439 EYVVK 453


>TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial (25%)
          Length = 489

 Score = 30.4 bits (67), Expect = 0.16
 Identities = 10/13 (76%), Positives = 11/13 (83%)
 Frame = +1

Query: 146 IISSFHHFFCACF 158
           I+S FHHFFC CF
Sbjct: 238 IVSIFHHFFCVCF 276


>TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine P1
           {Caenolestes fuliginosus;} , partial (49%)
          Length = 1266

 Score = 28.1 bits (61), Expect = 0.81
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 48  RRRVLIYSPARTAGQQGSGNVGRWRINFLSTQKWENPLMGWTSTGDPY 95
           RRRVL   P R   Q    + G WR  F +          W S G P+
Sbjct: 668 RRRVLPRRPRRWLFQLRKAHAGTWRWGFGTRASGSGDRRWWRSGGPPW 811


>TC15162 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
           (Fragment), partial (97%)
          Length = 808

 Score = 27.7 bits (60), Expect = 1.1
 Identities = 17/51 (33%), Positives = 23/51 (44%)
 Frame = -2

Query: 82  ENPLMGWTSTGDPYSHVGDSALDFDTEEAAKEFAERHGWEYVAEGLNIIHR 132
           E+ L G  S    +  +   A+D D   AA     RH     AE LN++HR
Sbjct: 213 EDGLEGLESENLRFDKLDWGAVDLDQATAALAVGHRHRVFLAAETLNLLHR 61


>TC8132 similar to UP|Q7XAD5 (Q7XAD5) Ap26, partial (15%)
          Length = 557

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 64  GSGNVGRWRI--NFLSTQKWE 82
           GSG + RWR+   +L TQ W+
Sbjct: 275 GSGTISRWRLCRRYLPTQLWD 337


>BP060986 
          Length = 166

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 69 GRWRINFLSTQKWENPLMGWTSTGDP 94
          G W  N++ T    +   GW+S+G+P
Sbjct: 95 GAWXCNYVETTSKFHVCPGWSSSGNP 18


>AV414553 
          Length = 263

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 130 IHRFHCDFSNLNDSGIIISSFHHFFCACFAPLLI 163
           I  FHC FS+  +    + +F HFF   + P L+
Sbjct: 18  IPSFHCQFSHPLNVAFFLQTFIHFF---YLPFLL 110


>AV772546 
          Length = 526

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 72  RINFLSTQKWENPLMGWTSTGD 93
           R++F +   W N +  WTSTGD
Sbjct: 417 RMSFSNRCFWTNAISLWTSTGD 352


>TC11634 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Arabidopsis
           thaliana;}, partial (21%)
          Length = 446

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 47  LRRRVLIYSPARTAGQQG 64
           LRRR+ + SP  TA QQG
Sbjct: 189 LRRRLFLLSPKATADQQG 242


>BP075520 
          Length = 360

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   TASRGGSLRATLIRRFSTDALVESKPGE 35
           T     SL  T +RRFS+  + +++PG+
Sbjct: 173 TVPAPSSLFLTTVRRFSSGCMYQARPGQ 256


>BP057255 
          Length = 509

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 10/36 (27%)
 Frame = +3

Query: 132 RFHCDFSNLNDSGIIISSF----------HHFFCAC 157
           RF C  S L D G I SSF           HF C C
Sbjct: 342 RFTCGTSQLWDEGTISSSFLPLKTSMATKWHFACPC 449


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,450,505
Number of Sequences: 28460
Number of extensions: 49914
Number of successful extensions: 311
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of query: 166
length of database: 4,897,600
effective HSP length: 83
effective length of query: 83
effective length of database: 2,535,420
effective search space: 210439860
effective search space used: 210439860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)