BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136140.1 - phase: 0
(115 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP052632 40 5e-05
AV427921 40 5e-05
AU088980 35 0.002
BP041599 26 0.81
AV417825 25 1.4
TC13804 weakly similar to UP|Q8GRK2 (Q8GRK2) Somatic embryogenes... 24 3.1
BP041571 24 4.0
TC12698 UP|Q84PE1 (Q84PE1) Multifunctional beta-amyrin synthase,... 24 4.0
TC9217 similar to UP|Q9XQC7 (Q9XQC7) GrpE protein homolog, parti... 24 4.0
TC16670 similar to PIR|JC7519|JC7519 subtilisin-like serine prot... 24 4.0
TC10178 24 4.0
BI417932 24 4.0
TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Ar... 23 5.2
BP062616 23 5.2
TC16593 23 6.9
TC12875 similar to UP|AAR07598 (AAR07598) Fiber protein Fb19 (Fr... 23 6.9
TC15944 similar to UP|Q9ZST8 (Q9ZST8) Tic20, partial (46%) 23 9.0
TC11643 23 9.0
TC9786 23 9.0
>BP052632
Length = 489
Score = 40.0 bits (92), Expect = 5e-05
Identities = 27/78 (34%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Frame = -3
Query: 16 TPYEAWSVKKPYVMPFRIFG---FIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRF 72
TPYE W ++P V F FG FI + + D+ +K +LLG S SKAY
Sbjct: 484 TPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGK----FDNKFDKRILLGYSSNSKAYIV 317
Query: 73 FDRIIKKIVVSEDVAFDE 90
F+ + + S +V FD+
Sbjct: 316 FNSRTQVVEESINVKFDD 263
>AV427921
Length = 284
Score = 40.0 bits (92), Expect = 5e-05
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 9 SLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQR 47
+L+V++ P EAWS ++P V FRI +AYAH+P +R
Sbjct: 166 TLVVQNMMPEEAWSGRQPAVDHFRISRCLAYAHVPDQKR 282
>AU088980
Length = 360
Score = 34.7 bits (78), Expect = 0.002
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 9 SLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSK 68
S ++K PY+ + P ++ ++FG + Y+ + + LD + KCV LG +
Sbjct: 134 SPLLKGQCPYQFLNNDSPTLLDLKVFGTLCYSS-TLTHNXQKLDPRARKCVFLGFKTGTX 310
Query: 69 AYRFFD 74
Y D
Sbjct: 311 GYIVMD 328
>BP041599
Length = 540
Score = 26.2 bits (56), Expect = 0.81
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 88 FDEQGMLSLILKEIQIRIYRGIGGHQVI 115
+D+ SLI K +++IY+ +G H++I
Sbjct: 98 YDDSCTSSLICKFNKVKIYKAVGFHKII 181
>AV417825
Length = 406
Score = 25.4 bits (54), Expect = 1.4
Identities = 12/36 (33%), Positives = 17/36 (46%)
Frame = -3
Query: 15 STPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKT 50
STP A ++ P+ F I +Y H S + KT
Sbjct: 209 STPSTAAAIAFPFSAAFSIRAMASYKHFAMSSKAKT 102
>TC13804 weakly similar to UP|Q8GRK2 (Q8GRK2) Somatic embryogenesis receptor
kinase 1, partial (7%)
Length = 602
Score = 24.3 bits (51), Expect = 3.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 80 IVVSEDVAFDEQGMLSLILKEIQIRIY 106
I +S V + +LSL ++EI IRIY
Sbjct: 487 IWLSNCVGHKQPSLLSLYVREISIRIY 567
>BP041571
Length = 317
Score = 23.9 bits (50), Expect = 4.0
Identities = 10/30 (33%), Positives = 15/30 (49%)
Frame = -1
Query: 54 NSNKCVLLGVSEKSKAYRFFDRIIKKIVVS 83
N +C+LL K Y F R+ +V+S
Sbjct: 170 NRTQCILLSF*PKKPKYHFLVRLTSSLVLS 81
>TC12698 UP|Q84PE1 (Q84PE1) Multifunctional beta-amyrin synthase, complete
Length = 2442
Score = 23.9 bits (50), Expect = 4.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 67 SKAYRFFDRIIKKIVVSEDVAFDEQGMLSLILKEIQIRIYRGIG 110
+K F+ R +++V E V + Q +LKE +YR G
Sbjct: 1933 AKVLNFYSRHNQRMVGGERVIYHAQKRYMYLLKETDQMLYRQHG 2064
>TC9217 similar to UP|Q9XQC7 (Q9XQC7) GrpE protein homolog, partial (48%)
Length = 993
Score = 23.9 bits (50), Expect = 4.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 61 LGVSEKSKAYRFFDRIIKKIVVSEDVAFDEQGML 94
LGV +FFD ++ + ++ ED E+G++
Sbjct: 274 LGVEPVETVGKFFDPLLHEAIMREDSTEFEEGII 375
>TC16670 similar to PIR|JC7519|JC7519 subtilisin-like serine proteinase -
Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (42%)
Length = 1183
Score = 23.9 bits (50), Expect = 4.0
Identities = 13/55 (23%), Positives = 26/55 (46%)
Frame = -2
Query: 14 SSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSK 68
+S P+E + +++ F F+ +H PF + S+K +L G + S+
Sbjct: 711 ASAPFEKYLAPISFLLQFAAVKFVPDSHSPFQVLGTGPNPVSSKLLLSGQTPVSR 547
>TC10178
Length = 746
Score = 23.9 bits (50), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Frame = -2
Query: 37 IAYAHIPFSQR----------KKTLDDNSNKCVLL 61
I Y HIPF+ R KK++ + NKC L+
Sbjct: 685 ILYTHIPFAYRLKSTC*KLPTKKSITLSFNKCYLV 581
>BI417932
Length = 503
Score = 23.9 bits (50), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 42 IPFSQRKKTLDDNSNKCVLLGVS 64
+PFS KKT+++N +LL +S
Sbjct: 117 LPFSLVKKTIEENQRSLLLLLLS 49
>TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
thaliana;}, partial (52%)
Length = 800
Score = 23.5 bits (49), Expect = 5.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 25 KPYVMPFRIFGFIAYAHIPFSQRKKTLD 52
K YV PF + G I + PF++ LD
Sbjct: 605 KHYVGPFELVGKIEFHEPPFTEDLPRLD 688
>BP062616
Length = 427
Score = 23.5 bits (49), Expect = 5.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFG 35
+++S +EA +PY+ PF+I G
Sbjct: 333 LEASRRFEASKRHEPYIAPFQIHG 262
>TC16593
Length = 558
Score = 23.1 bits (48), Expect = 6.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 43 PFSQRKKTLDDNSNKCVL 60
P +Q KKT +D N C++
Sbjct: 346 PKNQNKKTTEDRVNLCII 293
>TC12875 similar to UP|AAR07598 (AAR07598) Fiber protein Fb19 (Fragment),
partial (64%)
Length = 668
Score = 23.1 bits (48), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +3
Query: 12 VKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIP 43
VK + + AW + + Y P F FIA IP
Sbjct: 96 VK*TIKHIAWQIGQTYNFPSAEFVFIAVVLIP 191
>TC15944 similar to UP|Q9ZST8 (Q9ZST8) Tic20, partial (46%)
Length = 619
Score = 22.7 bits (47), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 28 VMPFRIFGFIAYAHIPFS 45
V P +FG + HIPFS
Sbjct: 507 VQPAPVFGIL*ILHIPFS 560
>TC11643
Length = 494
Score = 22.7 bits (47), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 6/38 (15%)
Frame = +3
Query: 84 EDVAFDEQGMLSLILKEIQIR------IYRGIGGHQVI 115
ED A EQ L L E + R +Y G+G HQ+I
Sbjct: 6 EDEANFEQSFKDLKLSEREARQEIRKIMYAGMGKHQLI 119
>TC9786
Length = 1242
Score = 22.7 bits (47), Expect = 9.0
Identities = 8/15 (53%), Positives = 12/15 (79%)
Frame = +3
Query: 66 KSKAYRFFDRIIKKI 80
+ KAY+FF+RII +
Sbjct: 90 QQKAYQFFNRIINNV 134
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,857,805
Number of Sequences: 28460
Number of extensions: 20009
Number of successful extensions: 130
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of query: 115
length of database: 4,897,600
effective HSP length: 91
effective length of query: 24
effective length of database: 2,307,740
effective search space: 55385760
effective search space used: 55385760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)
Medicago: description of AC136140.1