BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135959.2 - phase: 0
(479 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura... 40 8e-04
AV427333 35 0.027
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 35 0.035
TC17010 similar to UP|BAC84225 (BAC84225) RRM-containing RNA-bin... 34 0.046
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 33 0.078
AU251550 33 0.078
TC11113 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 33 0.078
TC9594 weakly similar to GB|AAM19966.1|20466089|AY098956 At2g326... 33 0.10
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 33 0.13
BG662122 32 0.17
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 32 0.17
BP043764 29 0.19
TC15577 32 0.30
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 32 0.30
TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor ... 31 0.39
TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precu... 31 0.39
TC14473 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 sub... 31 0.39
AV407673 31 0.39
TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein p... 31 0.39
TC16697 30 1.1
>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
pp78/81, partial (5%)
Length = 710
Score = 40.0 bits (92), Expect = 8e-04
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Frame = +3
Query: 162 LPPSYPYA-QYSQ---------HPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQ 211
LPPS+P Q+SQ P+FPP P+ Q Q P+ PP QQ
Sbjct: 159 LPPSFPPPNQFSQTQIPAVPQRDPYFPPPVQSQETPNQQYQQPLAPQPHPQPGAPPHQQY 338
Query: 212 QH-------QQARPTF-PPIPMLYAELLPTLLLRGHYTTRQGKPPPDPLPPRFR 257
Q Q A P PPIP + L + L GH+ P PP R
Sbjct: 339 QQTPHPQYSQPAPPQHQPPIPSINPPQLQSSL--GHHVEEPPYVPSQTYPPNLR 494
>AV427333
Length = 387
Score = 35.0 bits (79), Expect = 0.027
Identities = 28/94 (29%), Positives = 35/94 (36%), Gaps = 2/94 (2%)
Frame = +3
Query: 163 PPSYPYAQYS--QHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPTF 220
PPS+PY + HPF PP + S P A + PP + P
Sbjct: 87 PPSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAPPPRGHPSPPPSSPPPPSSHPFT 266
Query: 221 PPIPMLYAELLPTLLLRGHYTTRQGKPPPDPLPP 254
PP P + P + R PPP PLPP
Sbjct: 267 PPPPHVRPPPSPHHPITPPPHVR---PPPPPLPP 359
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 34.7 bits (78), Expect = 0.035
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Frame = +1
Query: 162 LPPSYPYAQYS--QHPFFPPFYHQYPLPSGQPQVPVNAVVQQ---MQQQPPAQQQQHQQA 216
+PPS P + + P PP H L + P + Q QPP+ ++ A
Sbjct: 355 IPPSPPLLMSATDRAPLPPPSTHLTSLTTPSPPSSRTTITQTPLPSPPQPPSPPPKYGVA 534
Query: 217 RPTFPPIPMLYAELLPTLLLRGHYTTRQGKPP-----PDPLPP 254
PP+PM + P LL T+ PP P P PP
Sbjct: 535 TIPPPPLPMSSIDRTPLPLLSTPLTSLDAPPPTPTLSPPPPPP 663
>TC17010 similar to UP|BAC84225 (BAC84225) RRM-containing RNA-binding
protein-like, partial (4%)
Length = 569
Score = 34.3 bits (77), Expect = 0.046
Identities = 22/58 (37%), Positives = 30/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 162 LPPSYPYAQYSQHPFFPPF--YHQYPLPSGQPQVP-VNAVVQQMQQQPPAQQQQHQQA 216
+PP P QY H ++PP+ Y Q P+P Q P +AVV QPPA +Q +
Sbjct: 91 MPP--PPGQYHHHQYYPPYGGYMQQPVPPYQQYPPPYHAVV--APSQPPAANHPYQHS 252
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 33.5 bits (75), Expect = 0.078
Identities = 24/94 (25%), Positives = 32/94 (33%), Gaps = 3/94 (3%)
Frame = +1
Query: 163 PPSYPYAQYSQHPFFPPFYHQY---PLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPT 219
PP P Y + P PP+Y++ P PS P + PP +
Sbjct: 31 PPPVPKPYYYKSPPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSHSPPPPYYYKSPPPPSP 210
Query: 220 FPPIPMLYAELLPTLLLRGHYTTRQGKPPPDPLP 253
PP P Y P + PPP P+P
Sbjct: 211 SPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIP 312
>AU251550
Length = 329
Score = 33.5 bits (75), Expect = 0.078
Identities = 21/62 (33%), Positives = 25/62 (39%)
Frame = +2
Query: 163 PPSYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPTFPP 222
PP P Y+ P PPF H +P P P P + M QPP +P PP
Sbjct: 140 PPGPPRDPYAPAPPPPPFGHHHPPP---PHGPPSPPPPAMFYQPPPPPGPPGPPQPPHPP 310
Query: 223 IP 224
P
Sbjct: 311 GP 316
>TC11113 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (10%)
Length = 309
Score = 33.5 bits (75), Expect = 0.078
Identities = 23/89 (25%), Positives = 34/89 (37%)
Frame = +1
Query: 163 PPSYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPTFPP 222
P S+ ++ HP+ P P++A ++ QPP+ H P PP
Sbjct: 28 PHSHSHSHSHSHPWLP--------------FPISA---PLRSQPPSTPAVHHSPLPYLPP 156
Query: 223 IPMLYAELLPTLLLRGHYTTRQGKPPPDP 251
P L P GH+ +PPP P
Sbjct: 157 SPSL-PNSPPPPPRSGHHHPSPSEPPPPP 240
>TC9594 weakly similar to GB|AAM19966.1|20466089|AY098956
At2g32600/T26B15.16 {Arabidopsis thaliana;}, partial
(9%)
Length = 502
Score = 33.1 bits (74), Expect = 0.10
Identities = 29/99 (29%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Frame = +3
Query: 163 PPSYPYAQYSQHPFFPPFYHQYPLPSGQP----QVPVNAVV----QQMQQQPPAQQQQHQ 214
PP+ P QY Q P P P G P +P AV+ Q+ + PP Q Q Q
Sbjct: 69 PPTMPPPQYQQFRPPPSGMQMPPPPQGVPGPPRHLPPPAVMGGQPPQVWRPPPPPQYQQQ 248
Query: 215 QARPTFPPIPMLYAELLPTLLLRGHYTTRQGKPPPDPLP 253
RP P + PPP PLP
Sbjct: 249 VGRPMAYP--------------------QSSMPPPPPLP 305
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 32.7 bits (73), Expect = 0.13
Identities = 22/56 (39%), Positives = 27/56 (47%)
Frame = +1
Query: 163 PPSYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARP 218
P + Q HP F P H P QPQ P + +QQ Q QP +Q Q QQ +P
Sbjct: 46 PQPHLQHQPQHHPHFQP--HPQPQLQSQPQ-PQH--IQQSQPQPQSQPQHIQQPQP 198
Score = 30.4 bits (67), Expect = 0.66
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 161 QLPPSYPYAQYSQ-HPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPT 219
Q P + Q SQ P P + Q P P QPQ+ +QQ Q QP Q Q H Q T
Sbjct: 115 QSQPQPQHIQQSQPQPQSQPQHIQQPQP--QPQLQH---IQQSQPQPQFQNQ-HFQYPGT 276
Query: 220 FPPIP 224
+PP P
Sbjct: 277 YPPPP 291
>BG662122
Length = 386
Score = 32.3 bits (72), Expect = 0.17
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 239 HYTTRQGKPPPDPLPPRFRSDLK--CDFHQGALGHDVEGCYALKYIVKKLINQGKL 292
H + G+ P PPR D C++ + + HD++ C+ LK ++KLI G+L
Sbjct: 146 HMVGKSGQS*P---PPRRGIDTTK*CEYRRSVV-HDIDDCFTLKREIEKLIKMGRL 301
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 32.3 bits (72), Expect = 0.17
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Frame = +1
Query: 161 QLPPSYPYA--QYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARP 218
QLPP P Q P PP + PLP PQ + Q Q PP Q Q
Sbjct: 274 QLPPLLPPPPLQLPLQPLPPPVHPPLPLPLHPPQ---SHPAQHQAQAPPLDQAQTALIHH 444
Query: 219 TFPPI------PMLYAELL 231
PP+ P L A LL
Sbjct: 445 HLPPLHSHSTSPSLLAPLL 501
Score = 30.8 bits (68), Expect = 0.51
Identities = 28/93 (30%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Frame = +1
Query: 178 PPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPTFPPIPMLYAELLPTLLLR 237
PP H+ PL Q + + QQ P QQ H Q P PP+ LLP
Sbjct: 133 PPV*HK-PLVQHQHKHRQQPHHHRQQQHLPHLQQLHHQQLPLLPPLLHQLPPLLP----- 294
Query: 238 GHYTTRQGKPPP-----DPLPPRFRSDLKCDFH 265
PPP PLPP L H
Sbjct: 295 ---------PPPLQLPLQPLPPPVHPPLPLPLH 366
>BP043764
Length = 479
Score = 28.9 bits (63), Expect(2) = 0.19
Identities = 27/109 (24%), Positives = 41/109 (36%), Gaps = 11/109 (10%)
Frame = +1
Query: 146 ETFLITFQVMDINAAQLPPSYPYAQYSQHPFFPPFYHQY-----PLPSGQPQVPVNAVV- 199
E F +F ++ +PP + + + PF PP + PLPS P P +
Sbjct: 22 EAFCFSFPTSHLS---IPPKHHSSSATPPPFPPPSNRRRTPTTPPLPSAAPSKPPPLLPP 192
Query: 200 -----QQMQQQPPAQQQQHQQARPTFPPIPMLYAELLPTLLLRGHYTTR 243
Q + PP Q + P P L+ +LLL H+ R
Sbjct: 193 ILNPHQNLNPNPPQLQTLSKIPSNPLMPSPTSSGSLVNSLLLLLHHHHR 339
Score = 21.9 bits (45), Expect(2) = 0.19
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 247 PPPDPLPP 254
PPP PLPP
Sbjct: 336 PPPPPLPP 359
>TC15577
Length = 696
Score = 31.6 bits (70), Expect = 0.30
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = -1
Query: 280 KYIVKKLINQGKLTFENNIPHVLDNPLPNHAAVNMI-EVYEEAPRLDVRNVTTPLVPLHI 338
K+I K + QGKLT N+ H D N+AA ++I E + ++ T ++ I
Sbjct: 585 KHIYKDVSEQGKLTG*NS-NHSNDLRSLNNAAASLIRENSMQNA*TSMKRSLTLIMLFRI 409
Query: 339 KLCQASLFDHDHASCPECFCNPLGYCVVQNDIQSLM 374
+LC+ + S FC L + Q+DIQ +M
Sbjct: 408 RLCRKT-----QTSLTSLFCMYLSLMLTQDDIQLVM 316
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 31.6 bits (70), Expect = 0.30
Identities = 27/90 (30%), Positives = 32/90 (35%)
Frame = +1
Query: 166 YPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPTFPPIPM 225
YP Y QH F+PP P+ P P A PPA + A P P P
Sbjct: 202 YPSLPYPQHQFYPP-----PMAPPPPPPPAPA--------PPA-PPPYWAAPPPRPYGPP 339
Query: 226 LYAELLPTLLLRGHYTTRQGKPPPDPLPPR 255
L+ LP PP P PP+
Sbjct: 340 LFTSTLP-------------PRPPKPAPPK 390
>TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor 6, partial
(64%)
Length = 944
Score = 31.2 bits (69), Expect = 0.39
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 200 QQMQQ--QPPAQQQQHQQARPTFPPIPML-YAELLPTLLLRG 238
QQMQ Q QQQQH Q + FP P L YA +P +RG
Sbjct: 408 QQMQNSHQQNHQQQQHHQQQQIFPKQPALNYATQMPNQGIRG 533
>TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precursor,
partial (52%)
Length = 1060
Score = 31.2 bits (69), Expect = 0.39
Identities = 27/94 (28%), Positives = 35/94 (36%), Gaps = 14/94 (14%)
Frame = +2
Query: 163 PPSY------PYAQYSQHPFFPP-------FYHQYPLPSGQPQVPVNAVVQQMQQQPPAQ 209
PP+Y P + P PP +H P P+ P P + +PP
Sbjct: 203 PPNYHNHPVAPVHPPTHSPIHPPAHAPHHHHHHHPPAPAPAPIKPPVHPPTSVPVKPPTG 382
Query: 210 QQQHQQARPTFPPIPMLYAEL-LPTLLLRGHYTT 242
H P+ P P LY + LP LLL H T
Sbjct: 383 HHHHHHP-PSPAPAPALYTTITLPPLLLFTHLFT 481
>TC14473 similar to UP|Q8H1Y2 (Q8H1Y2) 20S proteasome alpha 6 subunit,
partial (86%)
Length = 1302
Score = 31.2 bits (69), Expect = 0.39
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 174 HPFFPPFYHQYPLPSGQPQVPVN--AVVQQMQQQPPAQQQQHQQARPTFP 221
H F + +P P + Q+P A VQQ++ PP+Q Q+HQ + FP
Sbjct: 957 HLGFQHYLDLHPYPDLR-QLPAQLLAQVQQVELHPPSQSQKHQSSVEQFP 811
>AV407673
Length = 427
Score = 31.2 bits (69), Expect = 0.39
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 164 PSYPYAQYSQHPFFPPFYHQY 184
P +P Q +HPFFPPF+ Y
Sbjct: 197 PLFPTFQNYRHPFFPPFFFSY 135
>TC14162 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (87%)
Length = 1232
Score = 31.2 bits (69), Expect = 0.39
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 174 HPFFPPFYHQYPLPSGQPQVPVNAVVQQ-MQQQPPAQQQQHQQARPTFPPI 223
H PP PLP+ + Q+ ++ + + Q++PP+ +++ + +P PP+
Sbjct: 75 HHHHPPHTFTCPLPNPRQQLQIHRLARHPAQRRPPSPRRRRLRPQPLHPPL 227
>TC16697
Length = 635
Score = 29.6 bits (65), Expect = 1.1
Identities = 24/91 (26%), Positives = 30/91 (32%)
Frame = -1
Query: 163 PPSYPYAQYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPAQQQQHQQARPTFPP 222
PP++P PP P PS + P A Q PP P P
Sbjct: 572 PPNHPP---------PPSSPSPPAPSQRKPAPATAPPSNSSQSPPPNPSSTDPTSPAPQP 420
Query: 223 IPMLYAELLPTLLLRGHYTTRQGKPPPDPLP 253
P + L P ++ QG P P P P
Sbjct: 419 HP---SHLSPA------SSSSQGSPVPSPSP 354
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,730,062
Number of Sequences: 28460
Number of extensions: 151824
Number of successful extensions: 1404
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of query: 479
length of database: 4,897,600
effective HSP length: 94
effective length of query: 385
effective length of database: 2,222,360
effective search space: 855608600
effective search space used: 855608600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC135959.2