TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135848.10 - phase: 0 
         (346 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11206 similar to UP|Q84V88 (Q84V88) Cyclin D, partial (43%)         141  2e-34
TC13323 weakly similar to UP|P93103 (P93103) Cyclin-D like prote...   105  1e-23
BP030979                                                               41  3e-04
BP047195                                                               31  0.27
TC15095 similar to UP|AAQ96377 (AAQ96377) Miraculin-like protein...    27  5.0

>TC11206 similar to UP|Q84V88 (Q84V88) Cyclin D, partial (43%)
          Length = 816

 Score =  141 bits (355), Expect = 2e-34
 Identities = 87/241 (36%), Positives = 133/241 (55%), Gaps = 4/241 (1%)
 Frame = +2

Query: 12  LLCSENNSTCFDDVVVDDSGISPSWDHTNVNLDNVGSDSFLCFVAQSEEIVKVMV-EKEK 70
           LLC E ++   DD   ++     +  HT      +  D  + F  + +E+V ++  E+ +
Sbjct: 146 LLCEEQHTFDDDD---EEKATHATECHT------INDDPLILFWEEDDELVSLISNERGE 298

Query: 71  DHLPREDYLIRLRGGDLDL---SVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSVF 127
            HL           G LDL     R E + WI K  A++GF  L+  L+V+Y DRF++  
Sbjct: 299 THL-----------GSLDLHDGGTRVEGVAWISKVSAHFGFSALTTVLAVSYFDRFITSP 445

Query: 128 QFPRGVTWTVQLLAVACFSLAAKMEEVKVPQSVDLQVGEPKFVFQAKTIQRMELMILSSL 187
           +F R   W  QL AVAC SLAAK+EE  VP  +DLQV E +FVF+AKTIQRMEL++LS+L
Sbjct: 446 RFQRDKPWMTQLSAVACLSLAAKVEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTL 625

Query: 188 GWKMRALTPCSFIDYFLAKISCEKYPDKSLIARSVQLILNIIKGIDFLEFRSSEIAAAVA 247
            W+M  +TP SF ++ + ++  +       + R  +++LN+I     + +  S +AAA  
Sbjct: 626 KWRMHPVTPISFFEHIIRRLGLKTRLHWEFLWRCERVLLNVIPDSRVMSYLPSTLAAAAM 805

Query: 248 I 248
           I
Sbjct: 806 I 808


>TC13323 weakly similar to UP|P93103 (P93103) Cyclin-D like protein, partial
           (19%)
          Length = 514

 Score =  105 bits (261), Expect = 1e-23
 Identities = 66/124 (53%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
 Frame = +1

Query: 216 SLIARSVQLILNIIKGIDFLEFRSSEIAAAVAISLKELPTQEVDKAITDFFI---VDKER 272
           SLI+RS QLIL+ I+G+DFL F+ SEIAAAVA+ +    TQ VD   T   +   V+KER
Sbjct: 22  SLISRSTQLILSTIRGLDFLAFKPSEIAAAVAMYVVG-ETQSVDTDQTISILIQHVEKER 198

Query: 273 VLKCVELIRDLSLIKVGGNNFASFVPQSPIGVLDAGCMSFKSDELTNGSCPNSSHSSPNA 332
           ++KCVE+I +LS  K    + A  VP SPIGVL+AGC S+KSD  TN     SS +SP+A
Sbjct: 199 LMKCVEMIHELSSNKDSSAS-APCVPPSPIGVLEAGCFSYKSDVDTNAGSSCSSDNSPSA 375

Query: 333 KRMK 336
           KR K
Sbjct: 376 KRRK 387


>BP030979 
          Length = 510

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 31/102 (30%), Positives = 54/102 (52%)
 Frame = +3

Query: 52  LCFVAQSEEIVKVMVEKEKDHLPREDYLIRLRGGDLDLSVRREALDWIWKAHAYYGFGPL 111
           L +V+   E ++ M E +    P  DY+ +++  D++ ++R   +DW+ +    Y     
Sbjct: 219 LPYVSDIYEYLRSM-EVDPSKRPLPDYVQKVQR-DVNANMRGVXVDWLVEVSEEYKLVSD 392

Query: 112 SLCLSVNYLDRFLSVFQFPRGVTWTVQLLAVACFSLAAKMEE 153
           +L   V+Y+DRFLS+    R     +QLL VA   +A+K EE
Sbjct: 393 TLYFCVSYIDRFLSLNSLSR---QKLQLLGVASMLVASKYEE 509


>BP047195 
          Length = 390

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 32/107 (29%), Positives = 51/107 (46%), Gaps = 6/107 (5%)
 Frame = -2

Query: 229 IKGIDFLEFRSSEIAAAVAISL-KELPTQEVDK---AITDFFIVDKERVLKCVELIRDLS 284
           I  + FL +RSS IAAA  +S   E+P     K   A +    + KE+++ C +LI++L 
Sbjct: 389 IHDVSFLAYRSSCIAAAPILSASNEIPEWSFVKPEHAESWCQGLRKEKIIVCYKLIQELI 210

Query: 285 LIKVGGNNFASFVPQSPIGVLDA--GCMSFKSDELTNGSCPNSSHSS 329
           +I          +PQ  +        C+S     L++ S  +SS SS
Sbjct: 209 VINHSSGRTPKVLPQLRVTTRTRRWSCIS----SLSSSSSSSSSSSS 81


>TC15095 similar to UP|AAQ96377 (AAQ96377) Miraculin-like protein
           (Fragment), partial (42%)
          Length = 979

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 257 EVDKAITDFFIVDKERVLKCVELIRDLSLIKVGGNNFASFVPQSP 301
           +++KA  D+       V KC  L R+L +   GG+   S   Q P
Sbjct: 648 KIEKADKDYVFSFCPSVCKCQTLCRELGIYDYGGDKHLSLSDQVP 782


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,975,446
Number of Sequences: 28460
Number of extensions: 79294
Number of successful extensions: 389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of query: 346
length of database: 4,897,600
effective HSP length: 91
effective length of query: 255
effective length of database: 2,307,740
effective search space: 588473700
effective search space used: 588473700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)