BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135801.7 - phase: 0
(189 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW164060 44 2e-05
TC13355 similar to UP|Q9FFD7 (Q9FFD7) Similarity to tyrosine pho... 33 0.024
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 33 0.040
AV412404 32 0.053
BP034655 32 0.069
TC12173 weakly similar to UP|LE22_METJA (P81291) 3-isopropylmala... 32 0.090
AV427341 32 0.090
AV773558 31 0.12
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 31 0.12
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 31 0.15
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin... 30 0.20
BP036655 30 0.26
TC14377 similar to UP|PSQ2_ARATH (Q41932) Oxygen-evolving enhanc... 30 0.26
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 30 0.26
TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 30 0.26
TC12853 30 0.26
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 30 0.34
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 30 0.34
TC14119 29 0.45
BP043294 29 0.58
>AW164060
Length = 406
Score = 43.5 bits (101), Expect = 2e-05
Identities = 23/59 (38%), Positives = 33/59 (54%)
Frame = +3
Query: 10 KILSRRSSVGCSSRISYYRSGEGVPFKWEMQPGIAKESSPKEVLPPLTPPPKNLSLGLP 68
++L++ SS+ + S+ + VPF WE QPG K + + LPPLTPPP S P
Sbjct: 96 RLLTKESSM---TNPSFRVAAVTVPFVWESQPGTPKYTFSENTLPPLTPPPSYYSSTSP 263
>TC13355 similar to UP|Q9FFD7 (Q9FFD7) Similarity to tyrosine phosphatase,
partial (33%)
Length = 420
Score = 33.5 bits (75), Expect = 0.024
Identities = 19/49 (38%), Positives = 27/49 (54%)
Frame = -1
Query: 109 FDILSRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
F+ L +LD S +M G + +SSS S L STR +HS ++CS
Sbjct: 288 FEGLGKLDRKMQSSTMEKFVGGTRTSSSLSSPLSTSTRIPIHSTINNCS 142
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 32.7 bits (73), Expect = 0.040
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Frame = +2
Query: 38 EMQPGIAKESSPKEVLPPLTP---PPKNLSLGLPKPSILELKKPASTMSKLKFWKKRVVK 94
++QP + S PP++P P KN S P P++ KP S S
Sbjct: 98 QLQPHLPTTPSHAPPTPPISPRAAPGKNSSPSTPSPALTPSAKPPSA*STTSATSSATTP 277
Query: 95 IKSKKPQEVCFHEDFDILSRLDCSSDSESMVSPRGSSFSSSSSSMSL 141
S S S S S S GSS SSS++++SL
Sbjct: 278 WSSSSSSS-------SPSSGTPSPSSSSSPSSSPGSSSSSSATALSL 397
>AV412404
Length = 386
Score = 32.3 bits (72), Expect = 0.053
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 127 PRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLGCFPMHI 178
P SSFSSSSSS+S+ KST ++L + + S+ S+ P+ +
Sbjct: 56 PSRSSFSSSSSSLSIPKSTTTTLSLLSFRRNHSTPAAASKTSSSPSSLPLSV 211
>BP034655
Length = 517
Score = 32.0 bits (71), Expect = 0.069
Identities = 22/41 (53%), Positives = 23/41 (55%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSE 158
SS S S S SS SSSSSS S S+ SS S SS SE
Sbjct: 254 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSE 132
Score = 30.8 bits (68), Expect = 0.15
Identities = 20/48 (41%), Positives = 25/48 (51%)
Frame = -3
Query: 126 SPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLGC 173
S SS SSSSSS S S+ SS S SS S ++ S K + + C
Sbjct: 248 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPKSAAVRC 105
Score = 30.0 bits (66), Expect = 0.26
Identities = 21/47 (44%), Positives = 24/47 (50%)
Frame = -3
Query: 119 SDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
S S S S SS SSSSSS S S+ SS S SS S + K +
Sbjct: 254 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPKSAA 114
Score = 30.0 bits (66), Expect = 0.26
Identities = 20/47 (42%), Positives = 24/47 (50%)
Frame = -3
Query: 124 MVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPST 170
M S SS SSSSSS S S+ SS S SS S ++ S P +
Sbjct: 260 M*SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPKS 120
Score = 27.7 bits (60), Expect = 1.3
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
SS S S S SS SSSSSS S S+ S S C+
Sbjct: 221 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSESPKSAAVRCA 102
Score = 27.3 bits (59), Expect = 1.7
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSS 155
SS S S S SS SSSSSS S S+ SS S S
Sbjct: 242 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSES 129
>TC12173 weakly similar to UP|LE22_METJA (P81291) 3-isopropylmalate
dehydratase large subunit 2 (Isopropylmalate isomerase
2) (Alpha-IPM isomerase 2) (IPMI 2) , partial (9%)
Length = 374
Score = 31.6 bits (70), Expect = 0.090
Identities = 18/43 (41%), Positives = 26/43 (59%)
Frame = +3
Query: 130 SSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLG 172
S+FSSSSSS S + + + + SCS +Q+ R+PST G
Sbjct: 93 SAFSSSSSSASSQRCQKPAPRRI--SCSVAAPQQLQRQPSTTG 215
>AV427341
Length = 432
Score = 31.6 bits (70), Expect = 0.090
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +3
Query: 32 GVPFKWEMQPGIAKESSPKE------VLPPLTPPPKNLSLGLPKPSILELKKPASTMS 83
GVPF WE PGI K+ + K+ L PL PP + + E K ST S
Sbjct: 234 GVPFSWEHLPGIPKKQNSKKKQDSSMKLLPLPPPTTTSQHSSKRTTHEETWKKNSTKS 407
>AV773558
Length = 469
Score = 31.2 bits (69), Expect = 0.12
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = +2
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHS 151
SS S S+ S SS SSSSSS SL +T+SS +S
Sbjct: 299 SSSSSSV*SSSSSSSSSSSSSSSLYTNTKSSSNS 400
Score = 29.6 bits (65), Expect = 0.34
Identities = 18/44 (40%), Positives = 24/44 (53%)
Frame = +2
Query: 126 SPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPS 169
S SS SSSSS S S+ SSL++ S S ++ + KPS
Sbjct: 299 SSSSSSV*SSSSSSSSSSSSSSSLYTNTKSSSNSSSPSLKNKPS 430
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 31.2 bits (69), Expect = 0.12
Identities = 23/56 (41%), Positives = 26/56 (46%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLGC 173
SS S S + SS SSSSSS S S+ SS S SS S + S L C
Sbjct: 332 SSSSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTSSYS*TSASNLFC 165
Score = 30.4 bits (67), Expect = 0.20
Identities = 22/45 (48%), Positives = 23/45 (50%)
Frame = -3
Query: 113 SRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
S S+ S S S SS SSSSSS S ST SS S SS S
Sbjct: 326 SSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTSSYS 192
Score = 30.0 bits (66), Expect = 0.26
Identities = 20/48 (41%), Positives = 24/48 (49%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
SS S + S SS SSSSSS S+ SS S SS + +T S
Sbjct: 335 SSSSSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTSSYS 192
Score = 27.7 bits (60), Expect = 1.3
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNT 161
SS S S + SS SSSSSS S S+ SS S +S S ++
Sbjct: 338 SSSSSSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSS 207
Score = 27.3 bits (59), Expect = 1.7
Identities = 20/47 (42%), Positives = 24/47 (50%)
Frame = -3
Query: 119 SDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
S S S S SS SSSSSS S S+ SS S S+ S ++ S
Sbjct: 338 SSSSSSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTSS 198
Score = 27.3 bits (59), Expect = 1.7
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -3
Query: 68 PKP--SILELKKPASTMSKLKFWKKRVVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMV 125
P+P I + +S +++ R + S + +C F + SR S S
Sbjct: 491 PRP*TKIFR*ETSSSATLRIRSATSRWLDAASARRLMIC---SFPMGSRSFWIGSSSSSS 321
Query: 126 SPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
+ +S SSSSSS S S+ SS S SS S + S
Sbjct: 320 ASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSSTSSSTS 201
Score = 26.6 bits (57), Expect = 2.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 129 GSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPST 170
GSS SSS+S+ + S+ SS S SS S ++ S ST
Sbjct: 341 GSSSSSSASASTSSSSSSSSSSSSPSSSSSSSSSSSSTSSST 216
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 30.8 bits (68), Expect = 0.15
Identities = 22/67 (32%), Positives = 28/67 (40%)
Frame = -3
Query: 113 SRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTLG 172
S CSS + + S SS SSSSS S STR C CS ++ S +
Sbjct: 505 SSFPCSSSTTTSSSSSSSSPFSSSSSSSCACSTRDLPRVGCGVCSSSSSSSSSSSSTPWF 326
Query: 173 CFPMHIS 179
F +S
Sbjct: 325 SFSTSLS 305
>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
(At5g24020), partial (45%)
Length = 470
Score = 30.4 bits (67), Expect = 0.20
Identities = 34/118 (28%), Positives = 44/118 (36%), Gaps = 9/118 (7%)
Frame = +3
Query: 68 PKPSILELKKPASTMSKLKFWKKRVVKIKSKKPQEVCFHEDFDILSRLDCSSDSESMVSP 127
PKPS S +W VK S++PQ S S+ S +P
Sbjct: 18 PKPSFNGTASRNSPAKPRAWWSSPPVKAASERPQ-----PPPTWASPSPASASRSSPSTP 182
Query: 128 RGSSFSSSSSSMSLMKSTRSSLH-------SVCSSC--SEGNTKQVSRKPSTLGCFPM 176
+ +S+SSS+S + ST SL S SC S G S PS PM
Sbjct: 183 MSACATSTSSSVSRIASTTPSLRFSTAIAASTRHSCVTSAGPISSSSASPSPRSKLPM 356
>BP036655
Length = 556
Score = 30.0 bits (66), Expect = 0.26
Identities = 21/48 (43%), Positives = 25/48 (51%)
Frame = +1
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
SS S VS S SS+SSS+S + SSLHS +S S T S
Sbjct: 241 SSSSSFSVSISVSLSSSTSSSLSSSLISSSSLHSSTTSSSSSTTSSSS 384
>TC14377 similar to UP|PSQ2_ARATH (Q41932) Oxygen-evolving enhancer protein
3-2, chloroplast precursor (OEE3) (16 kDa subunit of
oxygen evolving system of photosystem II) (OEC 16 kDa
subunit), partial (96%)
Length = 936
Score = 30.0 bits (66), Expect = 0.26
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 113 SRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSC-SEGNTKQVSRKPSTL 171
SRL + SM RGSS + S+ L STR ++HS SS S ++ +++ + + +
Sbjct: 78 SRLRMAQAMASMAGLRGSSQAVLEGSLQLSGSTRLNIHSSSSSSNSRVSSTRLTVRANQV 257
Query: 172 GCFPMHISRVLVSITRRG 189
P R ++ + G
Sbjct: 258 PSEPQSSRRAVMGLVAAG 311
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 30.0 bits (66), Expect = 0.26
Identities = 22/45 (48%), Positives = 23/45 (50%)
Frame = -3
Query: 113 SRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
S L SS S S S S SSSSSS S S+ SS S SS S
Sbjct: 385 SSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSS 251
Score = 30.0 bits (66), Expect = 0.26
Identities = 19/34 (55%), Positives = 20/34 (57%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHS 151
SS S S SP SS SSSSSS S S+ SS S
Sbjct: 358 SSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSS 257
Score = 29.3 bits (64), Expect = 0.45
Identities = 21/40 (52%), Positives = 22/40 (54%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
SS S S S SS SSSSSS S S+ SS S SS S
Sbjct: 364 SSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSLS 245
Score = 28.5 bits (62), Expect = 0.76
Identities = 19/48 (39%), Positives = 25/48 (51%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
S+ + S+ S SS SSSSSS S+ SS S SS S ++ S
Sbjct: 397 STSTSSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSS 254
Score = 27.7 bits (60), Expect = 1.3
Identities = 22/52 (42%), Positives = 25/52 (47%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPS 169
S S S S SS SSSSSS S S+ SS S SS S ++ S S
Sbjct: 406 SFPSTSTSSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSS 251
Score = 26.6 bits (57), Expect = 2.9
Identities = 18/42 (42%), Positives = 22/42 (51%)
Frame = -3
Query: 130 SSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRKPSTL 171
SS SSSSSS S + SS S SS S ++ S S+L
Sbjct: 373 SSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSL 248
Score = 25.8 bits (55), Expect = 4.9
Identities = 18/35 (51%), Positives = 19/35 (53%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSV 152
SS S S SS SSSSSS S S+ SS SV
Sbjct: 346 SSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSLSV 242
>TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (58%)
Length = 600
Score = 30.0 bits (66), Expect = 0.26
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -1
Query: 116 DCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSS 155
D S SM+S SS SSSSSS S +T SS C S
Sbjct: 219 DASPSCPSMLSSSSSSSSSSSSSSSSSSTTGSSSWIFCCS 100
>TC12853
Length = 440
Score = 30.0 bits (66), Expect = 0.26
Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 1/52 (1%)
Frame = +2
Query: 76 KKPASTMSKLKFWKKRVVKIKSKK-PQEVCFHEDFDILSRLDCSSDSESMVS 126
K+ +T+ +L ++ + V K KS QE ++L RL+C+SDS +++
Sbjct: 86 KEDNATLWRLYYYVEAVEKAKSLSCNQEA*LRRSSNVLERLNCNSDSSELIN 241
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 29.6 bits (65), Expect = 0.34
Identities = 21/40 (52%), Positives = 22/40 (54%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
SS S S S SS SSSSSS S S+ SS S S CS
Sbjct: 867 SSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKSLCS 748
Score = 28.5 bits (62), Expect = 0.76
Identities = 18/38 (47%), Positives = 21/38 (54%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSS 155
SS S S S SS SSSSSS S+ S S+CS+
Sbjct: 858 SSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKSLCSA 745
Score = 26.9 bits (58), Expect = 2.2
Identities = 20/40 (50%), Positives = 21/40 (52%)
Frame = -3
Query: 118 SSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCS 157
S S S S SS SSSSSS S S+ SS S SS S
Sbjct: 876 SPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKS 757
Score = 26.9 bits (58), Expect = 2.2
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -3
Query: 126 SPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVS 165
SP SS SSSSSS S S+ SS S S S + S
Sbjct: 876 SPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKS 757
Score = 26.6 bits (57), Expect = 2.9
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 126 SPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQV 164
S SS SSSSSS S S+ SS S SS S ++K +
Sbjct: 870 SSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKSL 754
Score = 26.6 bits (57), Expect = 2.9
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -3
Query: 124 MVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSR 166
++ P SS SSSSSS S S+ SS S SS S ++ S+
Sbjct: 888 LLFPSPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSK 760
Score = 25.8 bits (55), Expect = 4.9
Identities = 16/37 (43%), Positives = 20/37 (53%)
Frame = -3
Query: 131 SFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSRK 167
S SSSSSS S S+ SS S SS ++ +S K
Sbjct: 870 SSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSK 760
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 29.6 bits (65), Expect = 0.34
Identities = 38/141 (26%), Positives = 53/141 (36%), Gaps = 2/141 (1%)
Frame = +3
Query: 49 PKEVLPPLTPPPKNLSLGLPKPSILELKKPASTM--SKLKFWKKRVVKIKSKKPQEVCFH 106
P LPP +PPP P PS L +P+STM S + + P +
Sbjct: 171 PSPSLPPPSPPPLPPPQAPPLPSHLPSPEPSSTMPPSTPPPQPTKPCPLPKSTPSQ---- 338
Query: 107 EDFDILSRLDCSSDSESMVSPRGSSFSSSSSSMSLMKSTRSSLHSVCSSCSEGNTKQVSR 166
R+ SS S SP SS S++ + STR+S S N +
Sbjct: 339 PPSSAPHRVPTSSSLASPTSP--SSGPHSTTMAAPFSSTRTSTPS-----PNSNNPTPAS 497
Query: 167 KPSTLGCFPMHISRVLVSITR 187
KP+T S + S+ R
Sbjct: 498 KPTTFSSLQK*ASTLSFSLRR 560
>TC14119
Length = 783
Score = 29.3 bits (64), Expect = 0.45
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 2/62 (3%)
Frame = -3
Query: 40 QPGIAKESSPKEVLPPLTPPPKNL--SLGLPKPSILELKKPASTMSKLKFWKKRVVKIKS 97
QP + K P LP T PPKNL + LP + +L K + +F + ++ K
Sbjct: 637 QPKVGKTDQPYNNLPNTTKPPKNL*TTQHLPCKNRFKLSKLKTLQQNTQFIELKLEPTKF 458
Query: 98 KK 99
K
Sbjct: 457 SK 452
>BP043294
Length = 527
Score = 28.9 bits (63), Expect = 0.58
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 33 VPFKWEMQPGIAKESSPKEVLPPLT 57
+PF+W +PG K SS K+ PPL+
Sbjct: 245 LPFQWFGKPGFGKPSSFKKSSPPLS 319
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,217,112
Number of Sequences: 28460
Number of extensions: 77379
Number of successful extensions: 1158
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of query: 189
length of database: 4,897,600
effective HSP length: 85
effective length of query: 104
effective length of database: 2,478,500
effective search space: 257764000
effective search space used: 257764000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC135801.7