TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135801.4 + phase: 0 
         (61 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11438 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nucle...   120  5e-29
TC17666 similar to GB|AAP37664.1|30725284|BT008305 At2g43810 {Ar...    50  1e-07
TC9801 homologue to UP|Q8LAC6 (Q8LAC6) Glycine rich protein-like...    30  0.12
BP050564                                                               26  1.8
BP038045                                                               25  3.0

>TC11438 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nuclear
           ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
           (SmF), partial (97%)
          Length = 585

 Score =  120 bits (301), Expect = 5e-29
 Identities = 57/61 (93%), Positives = 59/61 (96%)
 Frame = +2

Query: 1   MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
           MEYKGYLVSVDSYMNLQLANTEEYIEG FTGNLGEILIRCNNVLY+RGVPEDEEIEDA +
Sbjct: 194 MEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAPE 373

Query: 61  D 61
           D
Sbjct: 374 D 376


>TC17666 similar to GB|AAP37664.1|30725284|BT008305 At2g43810 {Arabidopsis
           thaliana;}, partial (95%)
          Length = 770

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 20/46 (43%), Positives = 29/46 (62%)
 Frame = +3

Query: 1   MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYM 46
           ++Y+G L  +D YMN+ +  TEEY+ G      G+  IR NNVLY+
Sbjct: 234 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 371


>TC9801 homologue to UP|Q8LAC6 (Q8LAC6) Glycine rich protein-like, complete
          Length = 981

 Score = 29.6 bits (65), Expect = 0.12
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +2

Query: 3   YKGYLVSVDSYMNLQLANTEEYIEGNFTGN----LGEILIRCNNVLYMRGVPEDEEIEDA 58
           Y G+LV+ D++MN+ L    E I  N  G+    + E  IR N + Y+R VP DE I+  
Sbjct: 170 YNGHLVNCDTWMNIHL---REVICTNKDGDRFWRMPECYIRGNTIKYLR-VP-DEVIDKV 334

Query: 59  ADD 61
            ++
Sbjct: 335 QEE 343


>BP050564 
          Length = 490

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   EYKGYLVSVDSYMNLQLANT 21
           E+KGY +  DS+MN  +AN+
Sbjct: 419 EFKGYKLGGDSWMNTGIANS 478


>BP038045 
          Length = 556

 Score = 25.0 bits (53), Expect = 3.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 4   KGYLVSVDSYMNLQLANT 21
           +G L SVD Y+N++L NT
Sbjct: 106 RGTLHSVDQYLNIKLENT 159


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 739,044
Number of Sequences: 28460
Number of extensions: 5742
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 61
length of database: 4,897,600
effective HSP length: 37
effective length of query: 24
effective length of database: 3,844,580
effective search space: 92269920
effective search space used: 92269920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)