BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135799.9 - phase: 0
(754 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV771450 115 3e-26
CB827854 89 3e-18
AV410483 76 2e-14
AV769894 70 9e-13
AV780718 32 0.37
AV413041 29 3.2
TC18598 similar to UP|Q9ZP50 (Q9ZP50) FtsH-like protein Pftf pre... 28 5.4
AV769392 28 7.1
TC15859 weakly similar to UP|O97985 (O97985) MHC class I related... 28 7.1
TC14337 similar to UP|Q94JQ8 (Q94JQ8) AT3g57880/T10K17_90, parti... 28 7.1
TC12377 similar to UP|Q9SQF7 (Q9SQF7) Chitinase, partial (7%) 27 9.2
TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial... 27 9.2
>AV771450
Length = 436
Score = 115 bits (288), Expect = 3e-26
Identities = 56/64 (87%), Positives = 59/64 (91%)
Frame = +2
Query: 250 WPGKLTLTDKAIYFEGAGLLGNKRAMRLDLTYDGLRVEKAKVGPLGSSLFDSAVSISSGS 309
WPGKLTLTDKAIYFE AGLLGNKRAMRLDLT+DGL+V KAKVGP GS+LFDSAVSISSGS
Sbjct: 32 WPGKLTLTDKAIYFEAAGLLGNKRAMRLDLTHDGLQVVKAKVGPFGSALFDSAVSISSGS 211
Query: 310 ESNW 313
E W
Sbjct: 212 ELKW 223
Score = 107 bits (267), Expect = 7e-24
Identities = 69/144 (47%), Positives = 79/144 (53%), Gaps = 3/144 (2%)
Frame = +3
Query: 240 PVLKWENNMAWPGKLTLTDKAIYFEGAGLLGNKRAMRLDLTYDGLRVEKAKVGPLGSSLF 299
P LKWENNMA L K + L R + ++ LG
Sbjct: 3 PPLKWENNMAGLANSLLLIKQSILRLLAYWEIREP*DWILHMMDYR**RQRLDLLGLRSL 182
Query: 300 DSAVSISSGSESNWWVLEFIDLGGDMRRDVWHALISEVIALHKFTHEYGP---DEYGPNV 356
+ WVLEFIDLGG+MRRDVWHALISEVI+LHKF EYGP DE NV
Sbjct: 183 TLLFLFLRVQS*SGWVLEFIDLGGEMRRDVWHALISEVISLHKFIREYGPDDSDELLSNV 362
Query: 357 FEARKGKQRATSSAINGIARLQAL 380
+ A KGK+RA +SAINGIARLQAL
Sbjct: 363 YGAHKGKERAKTSAINGIARLQAL 434
>CB827854
Length = 564
Score = 89.0 bits (219), Expect = 3e-18
Identities = 46/136 (33%), Positives = 84/136 (60%), Gaps = 1/136 (0%)
Frame = +2
Query: 600 RLGRFFGGVMIRDQPPSNTIQKIIAVKDAMRDVENMTQKVNVSLLKIRSILLSGNPQITT 659
R GR ++ P N +++++ +++A+ E++ Q N+ LLK+R++LL+ PQ T
Sbjct: 32 RKGRSLEAFIVTPPPNRNPVEQLLTLQEAITQFESLIQAGNIVLLKVRALLLALLPQATE 211
Query: 660 EVAVLMLTWATILFIVPFKYILSFLLFDMFTRELEFRREMVERLTKLLRERWHAVPAAPV 719
+VA+L++ A + VP KYI+ + F+ +TRE+ R+E +R + +RE W +PAAPV
Sbjct: 212 KVALLLVFIAAVFAFVPPKYIIFVIFFEYYTREMPCRKESSDRWVRRMREWWIRIPAAPV 391
Query: 720 AVL-PFENEESKSEVS 734
++ P E ++ K V+
Sbjct: 392 ELIKPDECKKRK*RVA 439
>AV410483
Length = 432
Score = 76.3 bits (186), Expect = 2e-14
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Frame = +2
Query: 276 RLDLTYDGLRVEKAKV-GPLGSSLFDSAVSISSGSESNWWVLEFIDLGGDMRRDVWHALI 334
+ DL+ D +V K ++ GP G+ LFD AV SS S S VLEF +L G RRD W A+I
Sbjct: 11 KYDLSDDLNQVVKPELTGPWGTRLFDKAVFYSSVSLSEPVVLEFPELKGHARRDYWLAII 190
Query: 335 SEVIALHKFTHEYGPDEYGPNVFEARKGKQRATSSAINGIARLQALQHLRKLLD-DPTKL 393
E++ +HKF +Y + A A+ GI RLQALQ + + L
Sbjct: 191 REILFVHKFISKYRIQGV---------ARDEALWKAVLGILRLQALQDISSAIPIQNDSL 343
Query: 394 VQFSYLQNAPNGDIVLQSLA 413
+ FS P GD++L++LA
Sbjct: 344 LMFSLCDQLPGGDLILETLA 403
>AV769894
Length = 467
Score = 70.5 bits (171), Expect = 9e-13
Identities = 40/108 (37%), Positives = 63/108 (58%)
Frame = -1
Query: 625 VKDAMRDVENMTQKVNVSLLKIRSILLSGNPQITTEVAVLMLTWATILFIVPFKYILSFL 684
V++A+ E + Q N+ LLK+R +LLS PQ T +A +L+ A +L ++P KY++ +
Sbjct: 467 VQNAVSQAEQLIQDGNIILLKLRGLLLSIFPQATEMLAFALLSAALVLALLPCKYLVLLV 288
Query: 685 LFDMFTRELEFRREMVERLTKLLRERWHAVPAAPVAVLPFENEESKSE 732
+FT R+ ER + LRE W ++PAAPV L + EE K +
Sbjct: 287 FLAVFTMYSPPRKASTERWNRRLREWWFSIPAAPV-TLERDKEEKKKK 147
>AV780718
Length = 494
Score = 32.0 bits (71), Expect = 0.37
Identities = 27/97 (27%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Frame = -2
Query: 456 LRKWMKSPSWGS-STSTSFWKNTSTKGLVLSKNHVVADLSLTERAAKTSKQKSQVVEKTQ 514
LRK + W +TSTS W +S ++LS + V+ ++ T + KT +++
Sbjct: 460 LRKLFQFGLWHRLATSTSTWSRSSG*NIILSIHEVINEVDYTS*SWKT-------IQELS 302
Query: 515 ATIDAATLKGIPSNIDLFKELIFPITLTAKNFEKLRH 551
+I T+K I KE ++P T T+ RH
Sbjct: 301 CSILITTIKTITRT---KKETLWPETKTSLLLSSCRH 200
>AV413041
Length = 424
Score = 28.9 bits (63), Expect = 3.2
Identities = 13/49 (26%), Positives = 27/49 (54%)
Frame = -2
Query: 195 ISMSTWLAYINEFVKVRRENRSYQIPEFPQIDEEKILCIGSNSKQPVLK 243
+ S W + +E + + E+ S + PQ+D K+LC+ +++ +P K
Sbjct: 318 LKTSLWCSK-SESLAPQIESTSSLLSNAPQVDSSKLLCVSASASEPFSK 175
>TC18598 similar to UP|Q9ZP50 (Q9ZP50) FtsH-like protein Pftf precursor,
partial (19%)
Length = 545
Score = 28.1 bits (61), Expect = 5.4
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +1
Query: 109 SDVHP-SLQDPAFQRLIFITMLAWENPYTYVLSSNAEKASLQVAWVTLQSKRVTEEAFVR 167
SD+ P SL + A + + M+A +S +EK + + T KR++++A+V
Sbjct: 91 SDIGPWSLMEAAQSGDVIMRMMA--------RNSMSEKLAEDIDAAT---KRISDDAYVI 237
Query: 168 IAPAVSGVVDRPTVHNLFKVLAGDKDGISMSTWLAYINEFVKVRRENRSYQIPEF 222
+ +R + + +VL +K+ +S + A ++EFV++ ENR +P F
Sbjct: 238 ALRHIRN--NREAIDKIVEVLL-EKETLSGDEFRAILSEFVEIPVENR---VPPF 384
>AV769392
Length = 621
Score = 27.7 bits (60), Expect = 7.1
Identities = 15/49 (30%), Positives = 29/49 (58%)
Frame = +3
Query: 625 VKDAMRDVENMTQKVNVSLLKIRSILLSGNPQITTEVAVLMLTWATILF 673
V++ ++E ++ + +SLL+ S +S +PQI T +L + T+LF
Sbjct: 6 VRERKSELERESETLILSLLQFNSTPISISPQIRTVSISSILEFETLLF 152
>TC15859 weakly similar to UP|O97985 (O97985) MHC class I related protein 1
isoform B (MHC class I related protein, MR1B2 isoform),
partial (10%)
Length = 1385
Score = 27.7 bits (60), Expect = 7.1
Identities = 17/53 (32%), Positives = 26/53 (48%)
Frame = +3
Query: 359 ARKGKQRATSSAINGIARLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQS 411
ARK + +A+ + A +AL K + PT QF +GD+VLQ+
Sbjct: 303 ARKPEIKASVQELASRAASRALAEAAKNITPPTTAYQFEVSWKGFSGDLVLQT 461
>TC14337 similar to UP|Q94JQ8 (Q94JQ8) AT3g57880/T10K17_90, partial (16%)
Length = 1005
Score = 27.7 bits (60), Expect = 7.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 627 DAMRDVENMTQKVNVSLL----KIRSILLSGNPQITTEVAVLMLTWATILFIVPFKYILS 682
D MR V Q V L + ++IL + + T+ + L WA ++I PF+ +++
Sbjct: 118 DRMRSVAGRVQTVVGDLATQGERAQAILGWRDSRATSIFIIFSLIWAVFIYITPFQ-VVA 294
Query: 683 FLLFDMFTRELEFRREM 699
L+ R FR +M
Sbjct: 295 ILVGLYMLRHPRFRSKM 345
>TC12377 similar to UP|Q9SQF7 (Q9SQF7) Chitinase, partial (7%)
Length = 327
Score = 27.3 bits (59), Expect = 9.2
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = -2
Query: 423 TGFTSTRHQPENRPSNEIADSSNHVFDIDGSVYLRKWMKSPSWGSSTSTSFWKNTSTKGL 482
+G RH+P +R S+++ S + + +S S G+S+ S W+ T TKG
Sbjct: 287 SGSKMGRHEPGSRSSSDLWGSESPKSSHSAA-------ESESVGASSLKSSWERTRTKGR 129
Query: 483 VLSKNHVVADLSLTERAAKTSKQKSQ 508
++ ++ TER K ++ +
Sbjct: 128 AVT-------VTETERREKVRSREKR 72
>TC9005 similar to UP|Q84L76 (Q84L76) Expansin precursor, partial (92%)
Length = 1277
Score = 27.3 bits (59), Expect = 9.2
Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 7/95 (7%)
Frame = +2
Query: 391 TKLVQFSYLQNAPNGDIVLQSLAVNYWGSQLVTGFTSTRHQPENRP-------SNEIADS 443
TK + L+ P+ L S+ + W S ++T +TRH P + S A
Sbjct: 314 TKTLDGVTLEALPSSSPPLTSV-LRTWLSPVMTAVGATRHGPTSTSPCPCSSRSLSTAPE 490
Query: 444 SNHVFDIDGSVYLRKWMKSPSWGSSTSTSFWKNTS 478
S+ + V R SPS S+TST F TS
Sbjct: 491 SSR*LTVGSHVERRVESDSPSTVSATSTWF*SATS 595
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,627,501
Number of Sequences: 28460
Number of extensions: 143950
Number of successful extensions: 759
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of query: 754
length of database: 4,897,600
effective HSP length: 97
effective length of query: 657
effective length of database: 2,136,980
effective search space: 1403995860
effective search space used: 1403995860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC135799.9