TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135798.2 + phase: 0 
         (261 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7895 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, co...   503  e-143
TC14499 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, c...   487  e-139
TC7896 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, pa...   125  7e-30
AV406498                                                               80  1e-25
BP069673                                                               52  8e-13
AV773288                                                               38  0.002
BP039499                                                               30  0.55
TC11340                                                                27  3.5
TC14255                                                                26  7.9

>TC7895 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, complete
          Length = 1106

 Score =  503 bits (1296), Expect = e-143
 Identities = 251/261 (96%), Positives = 257/261 (98%)
 Frame = +3

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
           MAVGKNKRISKGKKG KKKAADPFAKKDWYDIKAPS+FQVKNVGKTLVSRTQGTKIASEG
Sbjct: 63  MAVGKNKRISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 242

Query: 61  LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
           LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKWQTL
Sbjct: 243 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 422

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
           IEAHVDVKTTDNYTLRMFCI FTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD
Sbjct: 423 IEAHVDVKTTDNYTLRMFCIAFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 602

Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK+LVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 603 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 782

Query: 241 TKVERPADETMVEGTPEIVGA 261
           TKV+RPADET+VEG  E+VGA
Sbjct: 783 TKVDRPADETVVEGATEVVGA 845


>TC14499 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, complete
          Length = 1119

 Score =  487 bits (1254), Expect = e-139
 Identities = 241/261 (92%), Positives = 253/261 (96%)
 Frame = +2

Query: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
           MAVGKNKRISKGKKG KKKA+DPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG
Sbjct: 53  MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 232

Query: 61  LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTL 120
           LKHRVFEVSLADLQGDE+ AFRKIRLRAEDVQGKN+LTNFWGM+FTTDKLRSLVRKWQTL
Sbjct: 233 LKHRVFEVSLADLQGDEEQAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTL 412

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMINQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRR+NQVKRTCYAQSSQIRQIRRKMREIM NQATSCD
Sbjct: 413 IEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCD 592

Query: 181 LKDLVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LK+LVRKFIPE+IGKE+EKAT+ IYPLQNVF+RKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 593 LKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG 772

Query: 241 TKVERPADETMVEGTPEIVGA 261
           TKV+RPADET+ E   EIVGA
Sbjct: 773 TKVDRPADETVAEEPTEIVGA 835


>TC7896 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, partial
          (25%)
          Length = 592

 Score =  125 bits (314), Expect = 7e-30
 Identities = 63/68 (92%), Positives = 64/68 (93%)
 Frame = +3

Query: 9  ISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEV 68
          ISKGKKG KKKAADPFAKKDWYDIKAPS+FQVKNVGKTLVSRTQGTKIASEGLKHRVFEV
Sbjct: 3  ISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEGLKHRVFEV 182

Query: 69 SLADLQGD 76
          SLA L  D
Sbjct: 183SLAFLLHD 206


>AV406498 
          Length = 248

 Score = 79.7 bits (195), Expect(2) = 1e-25
 Identities = 36/46 (78%), Positives = 40/46 (86%)
 Frame = +1

Query: 1  MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKT 46
          + VGKNKRISKGKKG KK+A DPFAKKDWY IKAP+V QVKNVG +
Sbjct: 34 ITVGKNKRISKGKKGSKKRACDPFAKKDWYGIKAPAVIQVKNVGNS 171



 Score = 52.8 bits (125), Expect(2) = 1e-25
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +3

Query: 47  LVSRTQGTKIASEGLKHRVFEVSLAD 72
           LVSRTQGTKIASEGLKHRVFEVSLAD
Sbjct: 171 LVSRTQGTKIASEGLKHRVFEVSLAD 248


>BP069673 
          Length = 516

 Score = 51.6 bits (122), Expect(2) = 8e-13
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +2

Query: 120 LIEAHVDVKTTDNYTLRMFCIGFTKRRS 147
           LI++HVDV TTDNY LRMFCIGF+KRR+
Sbjct: 395 LIKSHVDVNTTDNYILRMFCIGFSKRRT 478



 Score = 37.4 bits (85), Expect(2) = 8e-13
 Identities = 17/27 (62%), Positives = 21/27 (76%)
 Frame = +3

Query: 75  GDEDNAFRKIRLRAEDVQGKNLLTNFW 101
           GDE++AFR      EDVQG+N+LTNFW
Sbjct: 276 GDEEHAFRD-----EDVQGRNVLTNFW 341


>AV773288 
          Length = 422

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = -2

Query: 168 MREIMINQATSCDLKDLVRKFIPE-MIGKEIEKATSSIYPLQNV 210
           MR IM + ATSCDLK++VR+F PE   G+ + KAT+  +PL  V
Sbjct: 421 MRGIMTHPATSCDLKEVVRQFNPEGDWGRGLRKATT--WPLHLV 296


>BP039499 
          Length = 509

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 24  FAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLK-HRVFEVSLADLQGDEDNAFR 82
           F    + D+K   + Q KN+   +       +    G K HR+ E++L DLQG E++ F+
Sbjct: 335 FQDIQYCDVK--EIAQKKNLSSLVTVIAFDIETTGFGAKNHRIIEIALRDLQGGENSTFQ 508


>TC11340 
          Length = 543

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/65 (29%), Positives = 30/65 (45%), Gaps = 3/65 (4%)
 Frame = -3

Query: 98  TNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQV---KRTC 154
           TN  G DF + K  + + KW   I+A+  V       +  FCI  + + +N +    R C
Sbjct: 307 TNLNGSDFFSCK*STPL*KWWQFIQANRMVSGRATQYMLAFCISHSIKCNNTIF*SVRIC 128

Query: 155 YAQSS 159
           + Q S
Sbjct: 127 HLQRS 113


>TC14255 
          Length = 641

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = -3

Query: 86  LRAEDVQGKNLLTNFWGMDFTTDKLRSLV 114
           L  E V+    L N WG+  +T +LRS +
Sbjct: 294 LGTESVESNRALVNPWGLQKSTKRLRSFL 208


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,328,571
Number of Sequences: 28460
Number of extensions: 33653
Number of successful extensions: 164
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of query: 261
length of database: 4,897,600
effective HSP length: 88
effective length of query: 173
effective length of database: 2,393,120
effective search space: 414009760
effective search space used: 414009760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)