BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135797.3 - phase: 0 /pseudo
(460 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV411195 219 6e-58
BP061082 124 3e-29
TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial... 109 8e-25
BP046554 99 1e-21
TC10027 similar to UP|Q9SL62 (Q9SL62) At2g20190 protein, partial... 30 1.1
BP041470 29 1.9
AW720445 29 1.9
TC15796 similar to UP|Q948T1 (Q948T1) Two-pore calcium channel, ... 28 2.4
BI420177 28 3.2
TC8628 similar to UP|AAR87229 (AAR87229) Putaive subtilisin-like... 28 3.2
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 28 4.2
BP078467 28 4.2
TC9121 similar to UP|P93474 (P93474) Myb26, partial (11%) 27 5.4
TC13633 27 5.4
TC8047 similar to UP|Q9ASV9 (Q9ASV9) At1g53210/F12M16_12, partia... 27 5.4
BP072797 27 5.4
TC8964 weakly similar to UP|Q94F54 (Q94F54) AT3g15070/K15M2_22, ... 27 7.1
TC11168 similar to UP|Q7TND5 (Q7TND5) Rpf1-pending protein (Frag... 27 7.1
BP029912 27 7.1
>AV411195
Length = 415
Score = 219 bits (559), Expect = 6e-58
Identities = 112/138 (81%), Positives = 122/138 (88%)
Frame = +2
Query: 284 GLQHAFVWAEFTKYVVTPEIGVSGVGIAMAVYGAFDGICSLVAGRLTFGLTSITSIVSFG 343
GLQ AFVWAEFTKYVVTP IGVSGVG +A YGAFDGICSL AGR T GL SI +IVSFG
Sbjct: 2 GLQQAFVWAEFTKYVVTPAIGVSGVGSILAAYGAFDGICSLAAGRFTSGLPSIAAIVSFG 181
Query: 344 AFVQAVVLILLLLDFSMSSGFIGTLYILFLAALLGIGDGVLMTQLNALLGMLFKHDMEGA 403
A VQ+VVLILLLL+ + +G +GTLY+LFLAALLGIG+GVLMTQLNALLGMLFKHD EGA
Sbjct: 182 ACVQSVVLILLLLNXXVPTGLLGTLYLLFLAALLGIGNGVLMTQLNALLGMLFKHDTEGA 361
Query: 404 FAQLKIWQSATIAMVFFL 421
FAQLKIWQSATIA+VFFL
Sbjct: 362 FAQLKIWQSATIAIVFFL 415
>BP061082
Length = 359
Score = 124 bits (311), Expect = 3e-29
Identities = 58/79 (73%), Positives = 69/79 (86%)
Frame = -3
Query: 382 GVLMTQLNALLGMLFKHDMEGAFAQLKIWQSATIAMVFFLAPYISFQAVIMVMLTLLCLS 441
GVLMTQLNALLG+LFKHD EGAFAQL IWQSATIA++FFL+P++SF+A++++ML LC S
Sbjct: 357 GVLMTQLNALLGLLFKHDTEGAFAQLNIWQSATIAIMFFLSPHVSFEAMVVIMLAFLCFS 178
Query: 442 FCSFLWLALKVGNASSPST 460
FCSFLWLALKV S ST
Sbjct: 177 FCSFLWLALKVVKTSLSST 121
>TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial (25%)
Length = 489
Score = 109 bits (273), Expect = 8e-25
Identities = 45/73 (61%), Positives = 57/73 (77%)
Frame = +1
Query: 76 GFGYDFAWDIIFVFYIFFCVCFFGGADSRIQECFDCWNFGLLVIPGCKFEAQLVYVGSGF 135
GFGY F WDI+ +F+ FFCVCFFGG +SR+Q+ FD W+ LL++PGCKFEAQLVY +
Sbjct: 211 GFGYHFTWDIVSIFHHFFCVCFFGGEESRLQKLFDYWHNWLLIVPGCKFEAQLVYTCAVL 390
Query: 136 CLSWVLRFYIMGW 148
+SW+L FY MGW
Sbjct: 391 FVSWILCFYNMGW 429
Score = 90.1 bits (222), Expect = 7e-19
Identities = 72/171 (42%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Frame = +2
Query: 1 MASVIIHRDEETPLVVATDESPIQFQQHKSHTRDVHILSIAFLLIFLAYGAAQNLQSTLN 60
MA +I+ RDEE PL+ D S + KSHTRDVHILS++FLLIFLAYGAAQNLQSTLN
Sbjct: 35 MAPMIL-RDEEVPLLTNDDSS---LESPKSHTRDVHILSLSFLLIFLAYGAAQNLQSTLN 202
Query: 61 TASGELIVCIEFSGGGFGYDFAWDIIFVFYIFFCVCFFGGADSRIQECFDCWNFGLLVIP 120
T + G + IF + V G +S I + L +
Sbjct: 203 TEQ-------DLGTTSLGILYLSFTIFSVFASSVVRNLGSKNSLI---IGTTGYLLYLAA 352
Query: 121 GCKFEAQLVYVGS---GFCLSWVLRFYIMGWAACQGTYLTSTARSHAIDNN 168
K + S GFC S + W QGTYLTSTARSHA DN+
Sbjct: 353 NLKPNWYTLVPSSLFLGFCASII-------WVG-QGTYLTSTARSHAKDND 481
>BP046554
Length = 556
Score = 99.0 bits (245), Expect = 1e-21
Identities = 46/67 (68%), Positives = 54/67 (79%)
Frame = -1
Query: 152 QGTYLTSTARSHAIDNNFHEGAVIGDFNGEFWGVYTLHQFIGNLITFALLSDGQEGSTNG 211
+G YLTSTARSHA DN EGAVIGDFNGEFW V+ LHQFIGNLITFALL+DG++ ST
Sbjct: 550 EGIYLTSTARSHATDNKLDEGAVIGDFNGEFWAVFALHQFIGNLITFALLNDGKKPSTRE 371
Query: 212 TTLLFVV 218
+L ++
Sbjct: 370 RRILLLL 350
>TC10027 similar to UP|Q9SL62 (Q9SL62) At2g20190 protein, partial (22%)
Length = 534
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 4/36 (11%)
Frame = +3
Query: 81 FAWDIIFVFY----IFFCVCFFGGADSRIQECFDCW 112
F WD V++ I+FC+ FF RI DCW
Sbjct: 324 FWWDFHCVYFLTLVIYFCLPFFPAHFYRILRVLDCW 431
>BP041470
Length = 410
Score = 28.9 bits (63), Expect = 1.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 87 FVFYIFFCVCFFGGADSRI 105
+VF++F CVCF G + R+
Sbjct: 71 WVFFLFLCVCFLGEVERRV 15
>AW720445
Length = 500
Score = 28.9 bits (63), Expect = 1.9
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = +2
Query: 206 EGSTNGTTLLFVVFLSVMTFGAILTCFLHKRGDYSKGGYKHLDAGTGQSKSLKSLC 261
EG+ + +++ F+ F+S TFG TC L G + G+K A +K +C
Sbjct: 203 EGNFSSSSIFFLRFISS*TFGTAGTCLL---GRFVYDGWKSSSACLNTAKCFIFIC 361
>TC15796 similar to UP|Q948T1 (Q948T1) Two-pore calcium channel, partial
(42%)
Length = 1524
Score = 28.5 bits (62), Expect = 2.4
Identities = 24/99 (24%), Positives = 39/99 (39%)
Frame = +1
Query: 139 WVLRFYIMGWAACQGTYLTSTARSHAIDNNFHEGAVIGDFNGEFWGVYTLHQFIGNLITF 198
W + ++ GW + S +N + +G DF + TL IG ITF
Sbjct: 214 WQVVEFVFGWIYV--IEMALKVYSFGFENYWRDGQNRFDF------IITLIIVIGETITF 369
Query: 199 ALLSDGQEGSTNGTTLLFVVFLSVMTFGAILTCFLHKRG 237
L DG TNG + +++ ++ +L RG
Sbjct: 370 VLPDDGVPFITNGEWIRYLLLARMLRLIRLLMHVKRYRG 486
>BI420177
Length = 444
Score = 28.1 bits (61), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 74 GGGFGYDFAWDIIFVFYIFF 93
GGG G W ++F+F+ FF
Sbjct: 113 GGGCGGGCGWSLLFIFFFFF 54
>TC8628 similar to UP|AAR87229 (AAR87229) Putaive subtilisin-like
proteinase, partial (5%)
Length = 547
Score = 28.1 bits (61), Expect = 3.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 74 GGGFGYDFAWDIIFVFYIFFCVCFFGGADSRIQECFDCWNFGLLV 118
G F ++F+W ++F + C F G + +CF C F + +
Sbjct: 386 GLDFTHEFSWGLVFGW------CLFSGGNCEGNKCFSCVFFPVYI 502
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 27.7 bits (60), Expect = 4.2
Identities = 19/68 (27%), Positives = 29/68 (41%)
Frame = -1
Query: 38 LSIAFLLIFLAYGAAQNLQSTLNTASGELIVCIEFSGGGFGYDFAWDIIFVFYIFFCVCF 97
L F+LIF+ A + S+ T +++ I IF+F+IF VC
Sbjct: 636 LFFIFILIFVLLPAGSSSSSSGGT*VASMLLLI--------------FIFIFFIFVFVCT 499
Query: 98 FGGADSRI 105
FG + I
Sbjct: 498 FGANKAEI 475
>BP078467
Length = 352
Score = 27.7 bits (60), Expect = 4.2
Identities = 18/43 (41%), Positives = 22/43 (50%)
Frame = -3
Query: 337 TSIVSFGAFVQAVVLILLLLDFSMSSGFIGTLYILFLAALLGI 379
TSI SF F + L LL S S + LY+LFL LG+
Sbjct: 347 TSIFSFITFSLILYSYLSLLYSSHHSSYPSLLYLLFLNLSLGV 219
>TC9121 similar to UP|P93474 (P93474) Myb26, partial (11%)
Length = 612
Score = 27.3 bits (59), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 112 WNFGLLVIPGCKFEAQLVYVGSGFCLS--WVLRFYIMG 147
W F LV+ GC E ++Y+ CLS +++ + I+G
Sbjct: 348 WRFSKLVVMGCNIEDFILYI----CLSLYYIVNYEIVG 449
>TC13633
Length = 706
Score = 27.3 bits (59), Expect = 5.4
Identities = 10/36 (27%), Positives = 17/36 (46%)
Frame = +1
Query: 79 YDFAWDIIFVFYIFFCVCFFGGADSRIQECFDCWNF 114
Y +W +++VF+ FF + G + F W F
Sbjct: 205 YVLSWLLVYVFFFFFTCEYIVGLWNNFHPTFASWKF 312
>TC8047 similar to UP|Q9ASV9 (Q9ASV9) At1g53210/F12M16_12, partial (31%)
Length = 1144
Score = 27.3 bits (59), Expect = 5.4
Identities = 25/111 (22%), Positives = 39/111 (34%), Gaps = 5/111 (4%)
Frame = +1
Query: 44 LIFLAYGAAQNLQSTLNTASGEL----IVCIE-FSGGGFGYDFAWDIIFVFYIFFCVCFF 98
+IF + Q T + G + ++C+ F + WD + F VC
Sbjct: 418 IIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFIVCIV 597
Query: 99 GGADSRIQECFDCWNFGLLVIPGCKFEAQLVYVGSGFCLSWVLRFYIMGWA 149
G + + F W +L I F LVYV Y+ GW+
Sbjct: 598 MGVFASFRTVFPLWT-SILAILLYPFSLALVYVLD----------YVFGWS 717
>BP072797
Length = 331
Score = 27.3 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -1
Query: 115 GLLVIPGCKFEAQLVYVGSGFCLSWVLRFYIM 146
G+ ++P C+ + + Y GS C S FY+M
Sbjct: 127 GVFLLPYCEMQILVPYFGSYTCNSLAEHFYVM 32
>TC8964 weakly similar to UP|Q94F54 (Q94F54) AT3g15070/K15M2_22, partial
(19%)
Length = 594
Score = 26.9 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 87 FVFYIFFCVCFFGGADSRIQECFDCWNFGLLVI 119
F+F C+C DS I + CW+ L+ I
Sbjct: 435 FIFCFVICICTCT*IDSHIAQLLYCWHRNLVSI 533
>TC11168 similar to UP|Q7TND5 (Q7TND5) Rpf1-pending protein (Fragment),
partial (13%)
Length = 567
Score = 26.9 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 73 SGGGFGYDFAWDIIFVFYIFFCVCF 97
+GGGF YD W+ V IF + F
Sbjct: 218 AGGGFSYDLVWEHCIVEVIFAGIGF 292
>BP029912
Length = 559
Score = 26.9 bits (58), Expect = 7.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 377 LGIGDGVLMTQLNALLGMLFKHDMEGA 403
+ +G+ +TQ+N L+ M++ +EGA
Sbjct: 512 VNVGEQAFLTQMNVLMNMMWGRSVEGA 432
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.329 0.143 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,777,911
Number of Sequences: 28460
Number of extensions: 136895
Number of successful extensions: 1108
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of query: 460
length of database: 4,897,600
effective HSP length: 93
effective length of query: 367
effective length of database: 2,250,820
effective search space: 826050940
effective search space used: 826050940
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC135797.3