TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135797.12 - phase: 0 
         (280 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662282                                                              112  5e-26
AI967736                                                              103  4e-23
BP084176                                                               75  9e-15
AV415287                                                               59  1e-09
BP075780                                                               41  4e-08
TC18194 weakly similar to UP|Q9FF76 (Q9FF76) Similarity to inosi...    40  6e-04
BP034194                                                               30  0.46
TC12173 weakly similar to UP|LE22_METJA (P81291) 3-isopropylmala...    27  3.0
TC9012                                                                 27  3.0
BP085151                                                               27  3.9
TC17345                                                                26  6.6
BP042402                                                               26  6.6
BP063085                                                               26  8.6
BP041816                                                               26  8.6

>BG662282 
          Length = 440

 Score =  112 bits (281), Expect = 5e-26
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = +1

Query: 1   MVGIFLCVWVRADYRNHVGNLKVSRVGTGIMGYLGNKGSISISMRLYQTTFCFVCTHLAS 60
           MVGI++ VWV+   R H+ NLKVS VG GIMGY+GNKGS+S+SM L+Q+  CFVC+HL+S
Sbjct: 145 MVGIYVSVWVQRRLRRHINNLKVSPVGVGIMGYIGNKGSVSVSMSLFQSRMCFVCSHLSS 324

Query: 61  GEKCGDELRRNLDIAEIIKRTKFS 84
           G+K G E RRN ++ EI++RT FS
Sbjct: 325 GQKDGAEQRRNSNVHEILRRTCFS 396


>AI967736 
          Length = 334

 Score =  103 bits (256), Expect = 4e-23
 Identities = 53/102 (51%), Positives = 68/102 (65%), Gaps = 7/102 (6%)
 Frame = +2

Query: 36  NKGSISISMRLYQTTFCFVCTHLASGEKCGDELRRNLDIAEIIKRTKFSHSLG------- 88
           ++GS+S+SM +YQT FCFVC+HL SGEK GD+L+RN D+ EI +RT F  SL        
Sbjct: 8   HEGSVSVSMSIYQTLFCFVCSHLTSGEKEGDDLKRNADVHEIHRRTHF-QSLSYIGLPKT 184

Query: 89  ILEHDNIIWLGDLNYRLAAGYDEIHELLKNNNLKALLEKDQL 130
           IL+H+ IIWLGDLNYR+     E   L+       L+EKDQL
Sbjct: 185 ILDHERIIWLGDLNYRINLSNVETRALVSKKQWSKLIEKDQL 310


>BP084176 
          Length = 353

 Score = 75.5 bits (184), Expect = 9e-15
 Identities = 37/64 (57%), Positives = 45/64 (69%)
 Frame = -3

Query: 169 KSKEKRRTPAWCDRILWKGEGLNQKMYVRGESKFSDHRPVYSLFTAQVDMTNKNLTRSAS 228
           KS EKRR PAWCDRI+W G+GL Q  Y R ESK SDHRPV ++F+A+V +    LTR  S
Sbjct: 321 KSXEKRRAPAWCDRIVWYGKGLKQLQYARSESKLSDHRPVKAVFSAEVRVL-PELTRVQS 145

Query: 229 TTIS 232
             +S
Sbjct: 144 LFLS 133


>AV415287 
          Length = 296

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 25/37 (67%), Positives = 29/37 (77%)
 Frame = +2

Query: 1   MVGIFLCVWVRADYRNHVGNLKVSRVGTGIMGYLGNK 37
           MVGIF+ VWVR   R H+ NLKVS VG G+MGY+GNK
Sbjct: 185 MVGIFITVWVRRSLRKHIQNLKVSTVGVGVMGYIGNK 295


>BP075780 
          Length = 400

 Score = 41.2 bits (95), Expect(2) = 4e-08
 Identities = 17/31 (54%), Positives = 21/31 (66%)
 Frame = +2

Query: 130 LRMEQNAGRIFEGWNEGSIYFAPTYKYLMNS 160
           L+ E   G +F GW+EG+I F PTYKY  NS
Sbjct: 305 LKKELREGHVFRGWHEGAIEFPPTYKYHPNS 397



 Score = 32.0 bits (71), Expect(2) = 4e-08
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 95  IIWLGDLNYRLAAGYDEIHELLKNNNLKALLEKDQL 130
           ++WLGDLNYR+     E    +K    +  L++DQ+
Sbjct: 114 VVWLGDLNYRIYMPDSETQSSIKRREWET*LKQDQV 221


>TC18194 weakly similar to UP|Q9FF76 (Q9FF76) Similarity to inositol
           polyphosphate 5'-phosphatase, partial (9%)
          Length = 676

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +1

Query: 187 GEGLNQKMYVRGESKFSDHRPVYSLFTAQVDM 218
           G GL Q  YVR E KFSDHRPV + F  +V++
Sbjct: 1   GTGLQQLSYVRKEFKFSDHRPVCATFLVEVEV 96


>BP034194 
          Length = 445

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 19/64 (29%), Positives = 26/64 (39%)
 Frame = +2

Query: 76  EIIKRTKFSHSLGILEHDNIIWLGDLNYRLAAGYDEIHELLKNNNLKALLEKDQLRMEQN 135
           E+ K     HS  I  H N  W          G+D +  L  + N     E+  LR+ Q 
Sbjct: 17  EMKKSPSSWHSTDIQTHTNTFW----------GWDVLQNLEYSENESTFSEESPLRLNQG 166

Query: 136 AGRI 139
           +GRI
Sbjct: 167 SGRI 178


>TC12173 weakly similar to UP|LE22_METJA (P81291) 3-isopropylmalate
           dehydratase large subunit 2  (Isopropylmalate isomerase
           2) (Alpha-IPM isomerase 2) (IPMI 2) , partial (9%)
          Length = 374

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 169 KSKEKRRTPAWCDRILWKGEGLNQK--MYVRGESK 201
           K K++ + P+WC R  WK E   +K  M ++ ESK
Sbjct: 105 KRKQREQDPSWC*RRRWKTEQP*RKPLMMLKHESK 1


>TC9012 
          Length = 598

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 144 NEGSIYFAPTYKYLMNSDQYVAQTCKSKEKRRTPAWCDRILW 185
           N   +Y  PTY+ ++   +Y   + +++   R PA+C  + W
Sbjct: 417 NSCIVYNFPTYQGVLKYIEYNYMSGRAERVHRIPAFCTELPW 292


>BP085151 
          Length = 360

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 14/30 (46%), Positives = 18/30 (59%)
 Frame = +1

Query: 225 RSASTTISRSCPLKPFTNSAALPSTCCAAA 254
           RS + T S +    P +  AALP+TCC AA
Sbjct: 115 RSPTPTTSPTPTDSPGSCPAALPATCCPAA 204


>TC17345 
          Length = 625

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 2/36 (5%)
 Frame = -1

Query: 152 PTYKYLMNSD--QYVAQTCKSKEKRRTPAWCDRILW 185
           PT  +L+ S   +Y   T KS      P WCDR+ W
Sbjct: 151 PTNGFLVRSPL*EYSLPTTKS-----IPCWCDRVNW 59


>BP042402 
          Length = 409

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 13/29 (44%), Positives = 17/29 (57%)
 Frame = +1

Query: 226 SASTTISRSCPLKPFTNSAALPSTCCAAA 254
           S + T S +    P +  AALP+TCC AA
Sbjct: 121 SPTPTTSPTPTASPGSCPAALPATCCPAA 207


>BP063085 
          Length = 433

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 141 EGWNEGSIYFAPTY 154
           EGWN+ +IY  PTY
Sbjct: 317 EGWNKSTIYQNPTY 276


>BP041816 
          Length = 511

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 83  FSHSLGILEHDNIIWLGDLNYR 104
           F HSL IL+H+    + DLN+R
Sbjct: 107 FRHSLPILQHELGFRISDLNFR 172


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,680
Number of Sequences: 28460
Number of extensions: 61057
Number of successful extensions: 356
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of query: 280
length of database: 4,897,600
effective HSP length: 89
effective length of query: 191
effective length of database: 2,364,660
effective search space: 451650060
effective search space used: 451650060
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)