TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135796.9 - phase: 0 /pseudo
         (911 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10707 similar to UP|Q9FKF1 (Q9FKF1) DNA-directed RNA polymeras...   175  3e-44
BP075578                                                               88  5e-18
BP075555                                                               52  6e-12
CB827138                                                               53  2e-07
TC18490 similar to UP|O22958 (O22958) Expressed protein (At2g340...    30  1.7
TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a hom...    28  6.5
TC9516 similar to UP|Q7SCF5 (Q7SCF5) Predicted protein, partial ...    28  8.5

>TC10707 similar to UP|Q9FKF1 (Q9FKF1) DNA-directed RNA polymerase subunit
           (DNA-directed RNA polymerase beta chain) , partial (9%)
          Length = 558

 Score =  175 bits (444), Expect = 3e-44
 Identities = 90/117 (76%), Positives = 98/117 (82%)
 Frame = +2

Query: 795 DACSW*WP*SPDN*TANRRES*KWRSTSRRNGT*LLNCIWC*YVDF*ATHVI**SL*SSG 854
           DAC W*WP     *TA RRES*KWRST+ RNGT*LLNC+WC*YVDF*ATHVI**S *SSG
Sbjct: 2   DACPW*WPS*LAT*TAYRRES*KWRSTNWRNGT*LLNCVWC*YVDF*ATHVI**SF*SSG 181

Query: 855 L*SLWIVGILQP*VESWCLFIL*EWKADFHHEATICMQTLNSGTPINEHCSTLKTRR 911
           L* +W+V ILQ *VE+WCL I+*EW+ DF HEATICM TL+SG PINEHCS LKT R
Sbjct: 182 L*IVWVVRILQL*VENWCLSIM*EWRPDF*HEATICMPTLDSGAPINEHCSPLKTGR 352


>BP075578 
          Length = 506

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 42/59 (71%), Positives = 49/59 (82%)
 Frame = -1

Query: 853 SGL*SLWIVGILQP*VESWCLFIL*EWKADFHHEATICMQTLNSGTPINEHCSTLKTRR 911
           +GL* +W V ILQ *VE+WCL I+*EW+ DF HEATICMQTL+SG PI+EHCS LKT R
Sbjct: 359 AGL*IVWAVRILQL*VENWCLSIM*EWRPDF*HEATICMQTLDSGAPIHEHCSPLKTGR 183


>BP075555 
          Length = 440

 Score = 52.4 bits (124), Expect(2) = 6e-12
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -2

Query: 885 HEATICMQTLNSGTPINEHCSTLKTRR 911
           HEATICMQTL+SGTPI+EHCS LKT R
Sbjct: 310 HEATICMQTLDSGTPIHEHCSPLKTGR 230



 Score = 35.8 bits (81), Expect(2) = 6e-12
 Identities = 17/24 (70%), Positives = 20/24 (82%)
 Frame = -3

Query: 852 SSGL*SLWIVGILQP*VESWCLFI 875
           SSGL* +W+V ILQ *VE+WCL I
Sbjct: 411 SSGL*IVWVVRILQL*VENWCLSI 340


>CB827138 
          Length = 277

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 27/31 (86%)
 Frame = +2

Query: 824 RNGT*LLNCIWC*YVDF*ATHVI**SL*SSG 854
           R GT* LNC+WC*YVDF*ATH I**S *SSG
Sbjct: 2   RKGT*FLNCVWC*YVDF*ATHAI**SF*SSG 94


>TC18490 similar to UP|O22958 (O22958) Expressed protein
           (At2g34050/T14G11.17), partial (34%)
          Length = 480

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 177 FLWMCL*QLINRDCITPGLERTL 199
           FLW C  Q + + C+ PGLE+TL
Sbjct: 70  FLWPCNLQDL*KSCVAPGLEQTL 2


>TC14149 homologue to PIR|T45927|T45927 ribosomal protein S3a homolog -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (87%)
          Length = 1191

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
 Frame = +3

Query: 330 AFCYCNEKVAESLSNWRVCECLCQ*KAVLCLLSFRWW*SLPSSRHC*------QWNIKSQ 383
           A CYC+  V+   + W  C          C     W   +   + C*      QW I+S 
Sbjct: 414 ALCYCSG*VSPLQAPWWPC----------CTQGLLWCSEICYGKWC*GM*GNCQWKIESP 563

Query: 384 SSSYERVKGW 393
                 V+GW
Sbjct: 564 EGQIHEVQGW 593


>TC9516 similar to UP|Q7SCF5 (Q7SCF5) Predicted protein, partial (54%)
          Length = 505

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +3

Query: 359 CLLSFRWW*-SLPSS--RHC*QWNIKSQSS 385
           C  +F+WW* +L +S   HC  WN+K+  S
Sbjct: 168 CRKAFQWW*WALEASFTEHCRNWNLKAMLS 257


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.365    0.160    0.668 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,919,669
Number of Sequences: 28460
Number of extensions: 342095
Number of successful extensions: 4414
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2352
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 2704
length of query: 911
length of database: 4,897,600
effective HSP length: 99
effective length of query: 812
effective length of database: 2,080,060
effective search space: 1689008720
effective search space used: 1689008720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 59 (27.3 bits)