TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135796.7 - phase: 0 
         (277 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP049942                                                               51  1e-11
AU088929                                                               28  1.3
AV778839                                                               28  1.3
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ...    28  1.3
TC12549 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19...    28  1.7
AV423046                                                               27  5.0
AV766044                                                               26  6.5
TC7797 similar to UP|TCTP_ORYSA (P35681) Translationally control...    26  6.5
BP036623                                                               26  6.5
TC14081 similar to UP|RCA_PHAAU (O98997) Ribulose bisphosphate c...    26  6.5
AW719663                                                               26  8.5
TC18637 similar to UP|BAD12326 (BAD12326) NADH dehydrogenase sub...    26  8.5
AV774280                                                               26  8.5

>BP049942 
          Length = 402

 Score = 50.8 bits (120), Expect(2) = 1e-11
 Identities = 25/47 (53%), Positives = 32/47 (67%)
 Frame = -3

Query: 209 KKETEHEDSENESLGLDEPHWVLTPSKELENIVRQEDGNDGLSRGTI 255
           KKETE +D  N S     P+WVL PS+ELE++V Q DG+DGL   T+
Sbjct: 400 KKETELKDP*NGSPSSPGPYWVLPPSQELESLVHQGDGHDGLCHHTL 260



 Score = 34.3 bits (77), Expect(2) = 1e-11
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = -1

Query: 257 EICKIYDLNTQDVVKYEKSTF 277
           +IC+IYDL+T DV+KY KS F
Sbjct: 255 KICQIYDLDTLDVIKYGKSLF 193


>AU088929 
          Length = 720

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 174 WILFRSYSHWRALQGS 189
           W++F SYS WR ++GS
Sbjct: 533 WLIFSSYSRWRNIKGS 580


>AV778839 
          Length = 538

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 17/56 (30%), Positives = 27/56 (47%)
 Frame = +1

Query: 22  DHTLPASSSTADFSQSPSTLKQLWKSINTGDKPFNAKAELFTDYVANKMNNGWVTL 77
           + ++  SSS+    Q+PST + LW S++ G   FN+              N WV+L
Sbjct: 190 EDSMACSSSSVTLFQTPSTKRHLW-SLSGGSSSFNSP-------------NAWVSL 315


>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
          Length = 1127

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 6/71 (8%)
 Frame = +3

Query: 29  SSTADFSQSPSTLKQLWKSINTGDKPFNAKAELF--TDYVANKMNNG----WVTLENAPD 82
           S  A    +P  +     S   GDKP+  K ELF   +   +K+N G    +  ++ A  
Sbjct: 180 SKDAKVDLTPDGVFTFTASAGAGDKPYEVKLELFDKVNVEESKINIGVRSIFSVVQKAES 359

Query: 83  GSFKKKIHGLG 93
           G +K+ + G G
Sbjct: 360 GWWKRLLRGEG 392


>TC12549 similar to GB|AAO11541.1|27363244|BT002625 At1g79930/F19K16_11
           {Arabidopsis thaliana;}, partial (25%)
          Length = 677

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = -1

Query: 137 IAMRGTIIHRKFFYGSVSLIPLSSAFSILPLPNVPF 172
           I+  GT++   FF+G+ +L+ +S    + P   +PF
Sbjct: 386 ISATGTLVFFTFFFGASTLVSVSICTGLSPASGMPF 279


>AV423046 
          Length = 427

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (49%)
 Frame = +3

Query: 13 RNWCFTRSIDHTLPASSSTADFSQSPSTLKQLWK 46
          + WCF  ++  TLP   S  D S   + + + WK
Sbjct: 36 KEWCFVITV*KTLPECESMMD*SYVVTNVGRYWK 137


>AV766044 
          Length = 391

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = +2

Query: 126 NARLVRRRLRHIAMRGTIIHRKFFYGSVSLIPLSSAFSILPLP 168
           N ++    ++H+  R T IH  FF   +  I  SSA    PLP
Sbjct: 176 NPKIKHGEVKHVKHRKTQIHISFFIIFIFSISSSSAPQPRPLP 304


>TC7797 similar to UP|TCTP_ORYSA (P35681) Translationally controlled tumor
           protein homolog (TCTP), complete
          Length = 1031

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
 Frame = +2

Query: 15  WCFTRSIDHTLPASSSTADFSQSPSTLKQLWKSINTGDK-------PFNAKAELFTDYVA 67
           W    ++D  + A+ S     +      Q  K ++  D        PF+ K  +F  ++ 
Sbjct: 167 WVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPPFDKK--MFVTFIK 340

Query: 68  NKMNNGWVTLENAPDGSFKKKIHGLGLWLLSRVKPSEIFL 107
             + N    L+      FKK I G   +LLS++   + F+
Sbjct: 341 RYIKNLTPKLDEENQVLFKKHIEGATKYLLSKLSDLQFFV 460


>BP036623 
          Length = 524

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -2

Query: 198 DGSQSSNTYSGKKETEHEDSENESLG--LDEPHWVLTPSKELENIVRQEDGN---DGLSR 252
           D + S N Y+G ++ +H D  N + G    +P+ +     +L++++   + +   D  SR
Sbjct: 523 DNTLSVNDYNGNEKVDHPDLANNAEGGPYQDPNEIFGELGDLDSLLGLGEADLRGDPFSR 344

Query: 253 GTIEE 257
           G  +E
Sbjct: 343 GQEDE 329


>TC14081 similar to UP|RCA_PHAAU (O98997) Ribulose bisphosphate
           carboxylase/oxygenase activase, chloroplast precursor
           (RuBisCO activase) (RA), partial (98%)
          Length = 1625

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 149 FYGSVSLIPLSSAFSILPLPNVPFFWILFRSYSHWR 184
           F GS +  PLSS+ +++ +  +P FW   ++ SHW+
Sbjct: 672 FAGSPAF-PLSSSPALIMMGLIPIFW---KTSSHWK 577


>AW719663 
          Length = 474

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
 Frame = +1

Query: 210 KETEHEDSENESLGLDEPHWV---LTPSKELENIVRQEDGNDGLSRGTI----EEICKIY 262
           +E+EHE    E + LDE + V       K  E  ++ +D N G+    +    EE  K+ 
Sbjct: 169 EESEHESKTEEQINLDEVNSVDENEPEHKPEEEHIKLDDAN-GVDENEVENKPEEHIKLD 345

Query: 263 DLN--------TQDVVKYE 273
           D N        +QD+V++E
Sbjct: 346 DANGVDENSEHSQDLVEHE 402


>TC18637 similar to UP|BAD12326 (BAD12326) NADH dehydrogenase subunit 2,
           partial (5%)
          Length = 506

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
 Frame = -3

Query: 148 FFYGSVSLIPLSS-AFSILPLPNVPFFWI 175
           + Y  +S   LS    SILP P V FFW+
Sbjct: 372 YIYSLISNHVLSLLTLSILPFPRVSFFWL 286


>AV774280 
          Length = 589

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 12/34 (35%), Positives = 16/34 (46%)
 Frame = +3

Query: 159 SSAFSILPLPNVPFFWILFRSYSHWRALQGSEKL 192
           S  F ++P      +WI F +   WR L GS  L
Sbjct: 48  SPPFLLIPKKERRAWWIRFSTLQSWRRLLGSSTL 149


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,086,067
Number of Sequences: 28460
Number of extensions: 70104
Number of successful extensions: 473
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of query: 277
length of database: 4,897,600
effective HSP length: 89
effective length of query: 188
effective length of database: 2,364,660
effective search space: 444556080
effective search space used: 444556080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)