BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135796.1 - phase: 0 /pseudo
(149 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 70 1e-13
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 69 3e-13
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 67 1e-12
AV413120 67 1e-12
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 65 6e-12
TC9459 similar to AAQ23982 (AAQ23982) Transcription factor Rap21... 62 3e-11
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 62 4e-11
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 62 5e-11
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 60 1e-10
TC14763 homologue to GB|AAM16262.1|20334802|AY094001 AT3g20310/M... 60 1e-10
TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive e... 59 3e-10
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 59 5e-10
TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive elemen... 59 5e-10
AV424427 58 6e-10
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 57 1e-09
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 57 1e-09
TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like ... 57 1e-09
TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive elem... 57 2e-09
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 57 2e-09
AI967551 56 2e-09
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 70.5 bits (171), Expect = 1e-13
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = +3
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
KYRGVR RPWGKWAAEIRDPF+ R+WLGT+N+AE
Sbjct: 207 KYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAE 311
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 68.9 bits (167), Expect = 3e-13
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = +3
Query: 92 QPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
QP T K+ R+ YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 324 QPSTFKRSQPHIAEKPMKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 497
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 67.4 bits (163), Expect = 1e-12
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = +2
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 521 QYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 625
>AV413120
Length = 330
Score = 67.0 bits (162), Expect = 1e-12
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Frame = +1
Query: 92 QPQTNKKVVQTSTSPTTGRRSCA----------KYRGVRMRPWGKWAAEIRDPFRNVRIW 141
QPQ++ + +T+ T+ S + +YRGVR RPWGKWAAEIRDP + R+W
Sbjct: 112 QPQSSSSATEAATTATSSEASASPSEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVW 291
Query: 142 LGTYNSAE 149
LGT + E
Sbjct: 292 LGTXXTXE 315
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 64.7 bits (156), Expect = 6e-12
Identities = 27/43 (62%), Positives = 35/43 (80%), Gaps = 2/43 (4%)
Frame = +3
Query: 109 GRRSCAK--YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
G+++ K YRG+R RPWGKWAAEIRDP + VR+WLGT+ +AE
Sbjct: 375 GKKNARKNVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFPTAE 503
>TC9459 similar to AAQ23982 (AAQ23982) Transcription factor Rap212, partial
(12%)
Length = 434
Score = 62.4 bits (150), Expect = 3e-11
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = +2
Query: 110 RRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGT 144
+R+ KYRGVR RPWGKWAAEIRDP R R+WLGT
Sbjct: 329 KRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGT 433
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 62.0 bits (149), Expect = 4e-11
Identities = 25/34 (73%), Positives = 30/34 (87%)
Frame = +2
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
YRG+R RPWGKWAAEIRDP + VR+ LGT+N+AE
Sbjct: 338 YRGIRQRPWGKWAAEIRDPRKGVRVGLGTFNTAE 439
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 61.6 bits (148), Expect = 5e-11
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +2
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+YRGVR RPWG++AAEIRDP + R+WLGT++SAE
Sbjct: 431 RYRGVRKRPWGRFAAEIRDPMKKARVWLGTFDSAE 535
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 60.5 bits (145), Expect = 1e-10
Identities = 23/35 (65%), Positives = 32/35 (90%)
Frame = +1
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
++RGVR RPWG++AAEIRDP++ R+WLGT++SAE
Sbjct: 238 RFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAE 342
>TC14763 homologue to GB|AAM16262.1|20334802|AY094001 AT3g20310/MQC12_6
{Arabidopsis thaliana;}, partial (18%)
Length = 618
Score = 60.5 bits (145), Expect = 1e-10
Identities = 23/35 (65%), Positives = 31/35 (87%)
Frame = +1
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+YRGVR RPWG++AAEIRDP + R+WLGT+++AE
Sbjct: 490 RYRGVRKRPWGRFAAEIRDPMKKARVWLGTFDTAE 594
>TC19103 homologue to UP|Q7Y0Y9 (Q7Y0Y9) Dehydration responsive element
binding protein, partial (37%)
Length = 382
Score = 59.3 bits (142), Expect = 3e-10
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +1
Query: 75 FYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAK---YRGVRMRPWGKWAAEI 131
F + K + + C S TN + TS S +R + YRG+R R WGKW AE+
Sbjct: 31 FVMMIKLMEEERDCCS----TNSTITTTSNSSRENKRKHQQDKPYRGIRQRKWGKWVAEV 198
Query: 132 RDPFRNVRIWLGTYNS 147
R+P + RIWLG+Y S
Sbjct: 199 REPNKRSRIWLGSYAS 246
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 58.5 bits (140), Expect = 5e-10
Identities = 22/34 (64%), Positives = 30/34 (87%)
Frame = +2
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
YRGVR RPWG++AAEIRDP++ R+WLGT+++ E
Sbjct: 185 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPE 286
>TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive element binding
protein, partial (36%)
Length = 497
Score = 58.5 bits (140), Expect = 5e-10
Identities = 27/35 (77%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
Frame = +3
Query: 116 YRGVRMRPWGKWAAEIRDPFRN-VRIWLGTYNSAE 149
YRGVR RPWGK+AAEIRD RN VR+WLGT++SAE
Sbjct: 297 YRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAE 401
>AV424427
Length = 281
Score = 58.2 bits (139), Expect = 6e-10
Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Frame = +2
Query: 93 PQTNKKVVQTSTSPTTGRRSCA-----------KYRGVRMRPWGKWAAEIRDPFRNVRIW 141
P + V + S S TT + A KYRGVR RPWGKWAAEIRDP + R+W
Sbjct: 98 PVESSSVTEESPSTTTAVSAAAPSYEDTGERRRKYRGVRQRPWGKWAAEIRDPHKAARVW 277
Query: 142 L 142
L
Sbjct: 278 L 280
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 57.4 bits (137), Expect = 1e-09
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Frame = +3
Query: 60 PPRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAK---- 115
PPR+ + LS + P + K+ +S +T+ +S+S ++ ++ +
Sbjct: 207 PPRSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSFSHQSSSSSSSSDHQTQEEDNNK 386
Query: 116 -YRGVRMRPWGKWAAEIRDPFR-NVRIWLGTYNSA 148
YRGVR RPWGK+AAEIRDP R R+WLGT+++A
Sbjct: 387 HYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTA 491
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 57.0 bits (136), Expect = 1e-09
Identities = 36/83 (43%), Positives = 50/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 66 ALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWG 125
A+S ++NS T++ + S +P+ + K QT GRR YRGVR RPWG
Sbjct: 61 AMSHEAKNSITPTHSGETQKSS--SPEPEVSGKQEQTCYQ---GRR----YRGVRRRPWG 213
Query: 126 KWAAEIRDPFR-NVRIWLGTYNS 147
K+AAEIRDP R R+WLGT+++
Sbjct: 214 KFAAEIRDPTRKGTRVWLGTFDT 282
>TC19692 similar to UP|Q9LYD3 (Q9LYD3) Transcription factor like protein,
partial (29%)
Length = 454
Score = 57.0 bits (136), Expect = 1e-09
Identities = 28/60 (46%), Positives = 36/60 (59%)
Frame = +3
Query: 90 SVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
S PQ+N + + T A YRGVRMR WGKW +EIR+P + RIWLGT+ + E
Sbjct: 216 SSPPQSNNNNTKRNRESNTH----AVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFCTPE 383
>TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (47%)
Length = 1174
Score = 56.6 bits (135), Expect = 2e-09
Identities = 22/34 (64%), Positives = 30/34 (87%)
Frame = +1
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+RGVR RPWG++AAEIRDP + R+WLGT+++AE
Sbjct: 199 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE 300
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 56.6 bits (135), Expect = 2e-09
Identities = 22/34 (64%), Positives = 30/34 (87%)
Frame = +3
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+RGVR RPWG++AAEIRDP + R+WLGT+++AE
Sbjct: 177 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE 278
>AI967551
Length = 466
Score = 56.2 bits (134), Expect = 2e-09
Identities = 25/35 (71%), Positives = 31/35 (88%), Gaps = 1/35 (2%)
Frame = +2
Query: 116 YRGVRMRPWGKWAAEIRDPFRN-VRIWLGTYNSAE 149
YRGVR RPWGK+AAEIRD R+ +R+WLGT++SAE
Sbjct: 284 YRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAE 388
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.126 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,369,064
Number of Sequences: 28460
Number of extensions: 29154
Number of successful extensions: 256
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of query: 149
length of database: 4,897,600
effective HSP length: 82
effective length of query: 67
effective length of database: 2,563,880
effective search space: 171779960
effective search space used: 171779960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC135796.1