BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.5 + phase: 0
(471 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15621 similar to UP|O81340 (O81340) 26S proteasome regulatory ... 38 0.003
TC15938 similar to UP|O81340 (O81340) 26S proteasome regulatory ... 36 0.012
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 32 0.22
TC13920 similar to UP|O82978 (O82978) A2-5a orf7, partial (6%) 29 1.9
TC14302 similar to UP|Y230_ARATH (O80934) Protein At2g37660, chl... 28 4.2
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 27 5.5
TC7908 27 5.5
TC13893 similar to UP|Q9LR38 (Q9LR38) F26F24.8, partial (4%) 27 7.2
TC13765 similar to UP|Q9LLL8 (Q9LLL8) Subtilisin-type serine end... 27 7.2
TC19003 27 7.2
TC16213 homologue to UP|Q9LFD4 (Q9LFD4) Protein kinase-like prot... 27 7.2
BI417928 27 7.2
TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partia... 27 7.2
TC14826 similar to UP|Q9M3Z0 (Q9M3Z0) 60S ribosomal protein L6, ... 27 7.2
TC17245 similar to UP|V721_ARATH (Q9ZTW3) Vesicle-associated mem... 27 9.4
TC11026 similar to UP|AAO25536 (AAO25536) Cellulose synthase, pa... 27 9.4
>TC15621 similar to UP|O81340 (O81340) 26S proteasome regulatory subunit
S5A, partial (80%)
Length = 1109
Score = 38.1 bits (87), Expect = 0.003
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 5/185 (2%)
Frame = +2
Query: 49 LLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMA 108
L+ ID + + R LR ++ A + I +D S+ D+ PSR
Sbjct: 56 LIHIIDPNNTNRRSFSRSLRFASTMVLEATM---------ICIDNSEWMRNGDYNPSRFQ 208
Query: 109 VIAKQVELFIREFFDQNPLSHVGLVT-TKDGVANCLT---DLGGSPESHIKALMGKLECS 164
A V L NP + VG++T GV +T DLG I A M LE
Sbjct: 209 AQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLG-----KILACMHGLEIG 373
Query: 165 GDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLMETI-QKCKKSKIRCSVI 223
G+ +L +++ L + ++ +++++ ++E I +K KK+ + +I
Sbjct: 374 GEMNLAAGIQVAQLALKHRQNKKQQQRIVVFAGSPVKHEKKMLEMIGRKLKKNSVALDII 553
Query: 224 GLAAE 228
E
Sbjct: 554 NFGEE 568
>TC15938 similar to UP|O81340 (O81340) 26S proteasome regulatory subunit
S5A, partial (56%)
Length = 768
Score = 36.2 bits (82), Expect = 0.012
Identities = 36/145 (24%), Positives = 62/145 (41%), Gaps = 5/145 (3%)
Frame = +3
Query: 89 IVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVT-TKDGVANCLT--- 144
I +D S+ D+ PSR A V L NP + VG++T GV +T
Sbjct: 102 ICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTS 281
Query: 145 DLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPG 204
DLG I A M LE G+ +L +++ L + ++ +I+++
Sbjct: 282 DLG-----KILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFTGSPIKHEK 446
Query: 205 DLMETI-QKCKKSKIRCSVIGLAAE 228
++E I +K KK+ + ++ E
Sbjct: 447 KMLEMIGRKLKKNSVALDIVNFGEE 521
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 32.0 bits (71), Expect = 0.22
Identities = 20/69 (28%), Positives = 33/69 (46%)
Frame = -2
Query: 6 GKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRR 65
G+ D +DD++D+ DDG E E E+ E +EDE D A+ + R+
Sbjct: 410 GEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEE------DEEALQPPKKRK 249
Query: 66 RLRALASNA 74
+ LA ++
Sbjct: 248 K*TTLAESS 222
>TC13920 similar to UP|O82978 (O82978) A2-5a orf7, partial (6%)
Length = 508
Score = 28.9 bits (63), Expect = 1.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 285 EGSVAICTCHEEAKTGGGYTCPRCKVR 311
E VA+C +E K G TCP + R
Sbjct: 407 ENKVAVCNKNENGKRNGNQTCPNSQAR 327
>TC14302 similar to UP|Y230_ARATH (O80934) Protein At2g37660, chloroplast
precursor, partial (75%)
Length = 1066
Score = 27.7 bits (60), Expect = 4.2
Identities = 19/66 (28%), Positives = 28/66 (41%), Gaps = 6/66 (9%)
Frame = -1
Query: 412 RASGILSQLLLPNDFQPYALDIKLLSKWCSTLPPCY------CDVASIYRTHEQVPVHEM 465
R S +L L PN + P ++ + K CST P C ++SIY PV+
Sbjct: 544 RISKVLLSLSFPNQYVPITQAVQRMVKVCSTHRPNQHNTLHSCSLSSIYLIFLTNPVNLF 365
Query: 466 ELTNTI 471
+ I
Sbjct: 364 RICTII 347
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 27.3 bits (59), Expect = 5.5
Identities = 10/17 (58%), Positives = 15/17 (87%)
Frame = +3
Query: 8 PLNGDLEDDDEDEANDD 24
P+ D++DDD+DEA+DD
Sbjct: 213 PIVEDVKDDDKDEADDD 263
>TC7908
Length = 1257
Score = 27.3 bits (59), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 364 CFGCQQSLLVLEQETRLNFPSLAQNANNNS 393
CFG L +L++ + +FPS Q ANN S
Sbjct: 761 CFGSNSILSLLQEPMK*SFPSNWQIANNRS 672
>TC13893 similar to UP|Q9LR38 (Q9LR38) F26F24.8, partial (4%)
Length = 567
Score = 26.9 bits (58), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = +1
Query: 213 CKKSKIRCSVIGLAAEMFICKHLCQETGGTYS 244
C KS++ CS G ++ + C C GG+ S
Sbjct: 319 CSKSRMNCSFGGGSSRLSACTRFCVLLGGSRS 414
>TC13765 similar to UP|Q9LLL8 (Q9LLL8) Subtilisin-type serine endopeptidase
XSP1, partial (20%)
Length = 635
Score = 26.9 bits (58), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Frame = -1
Query: 339 LFPIVPFAEISPSSQNDPN---HSFPNTCFGCQQS 370
+ PI P +PS PN SFP T FGC++S
Sbjct: 191 ILPIPPNFFTTPSVPQFPNLQ*TSFPFTLFGCKES 87
>TC19003
Length = 467
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 277 MGFPQRAAEGSVAICTCHEEAKTGG 301
+GF +++EG +I CH K GG
Sbjct: 167 IGFGNKSSEGHNSILCCHHHRKVGG 241
>TC16213 homologue to UP|Q9LFD4 (Q9LFD4) Protein kinase-like protein,
partial (28%)
Length = 653
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 251 HFKELILEHSPPPPAIAEYAT 271
H L+ H PPPP + E+AT
Sbjct: 48 HHHHLLRRHFPPPPHLNEWAT 110
>BI417928
Length = 509
Score = 26.9 bits (58), Expect = 7.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +1
Query: 247 LDESHFK---ELILEHSPPPPAIAEYATA---NLIKMGF 279
L + HF E + SPPPP TA NL+K+GF
Sbjct: 1 LRKPHFTTATETEINRSPPPPTTTTTTTAKIPNLLKLGF 117
>TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partial (28%)
Length = 969
Score = 26.9 bits (58), Expect = 7.2
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = +2
Query: 293 CHEEAKTGGGYTCPRCKVRVCELPTECRVCG 323
C+E + G CP+CK R L RV G
Sbjct: 212 CYEYERREGSQNCPQCKTRYKRLKGSPRVEG 304
>TC14826 similar to UP|Q9M3Z0 (Q9M3Z0) 60S ribosomal protein L6, complete
Length = 1116
Score = 26.9 bits (58), Expect = 7.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 325 TLISSPHLARSYHHLFPIVP----FAEISPSSQNDPNHSFPNTCFGC 367
TLIS L S HHL P +P F+ ++P P+ + +C C
Sbjct: 151 TLISPVSLLASQHHLAPKIPSVQTFSSLAPELPEIPS*TQL*SCSSC 11
>TC17245 similar to UP|V721_ARATH (Q9ZTW3) Vesicle-associated membrane
protein 721 (AtVAMP721) (v-SNARE synaptobrevin 7B)
(AtVAMP7B), partial (51%)
Length = 627
Score = 26.6 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 118 IREFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESH 153
++EF+DQNP +V + A+C+ D+ SP+SH
Sbjct: 307 LQEFWDQNPPKNV--AAKYEDQADCVGDI-DSPDSH 405
>TC11026 similar to UP|AAO25536 (AAO25536) Cellulose synthase, partial (25%)
Length = 946
Score = 26.6 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 15/31 (47%)
Frame = +1
Query: 293 CHEEAKTGGGYTCPRCKVRVCELPTECRVCG 323
C+E + G +CP+CK R RV G
Sbjct: 286 CYEYERKDGNQSCPQCKTRYKRQRGSARVDG 378
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,606,451
Number of Sequences: 28460
Number of extensions: 159642
Number of successful extensions: 1006
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of query: 471
length of database: 4,897,600
effective HSP length: 94
effective length of query: 377
effective length of database: 2,222,360
effective search space: 837829720
effective search space used: 837829720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC135795.5