TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135795.3 + phase: 0 
         (134 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11363 similar to UP|Q9SWV4 (Q9SWV4) ER66 protein (Fragment), p...    27  0.90
AV776003                                                               26  2.0
TC14221 similar to GB|AAP37784.1|30725524|BT008425 At4g24690 {Ar...    25  3.4
BP084469                                                               25  5.8
TC11801                                                                25  5.8
TC18281                                                                25  5.8
AU251647                                                               24  7.6
TC16822                                                                24  7.6
BP029778                                                               24  10.0

>TC11363 similar to UP|Q9SWV4 (Q9SWV4) ER66 protein (Fragment), partial
           (18%)
          Length = 557

 Score = 27.3 bits (59), Expect = 0.90
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 20  QNQQSMKDALAFVKGVEVEFEDKGDKYDEFLNVMNDFKTLRIDAEGAKARLDE 72
           Q +Q ++ ALA VK + V++ +  D+Y   LNV+ + +  ++  E      +E
Sbjct: 214 QTEQRLQIALARVKSM-VQYPEARDQYHRLLNVVTEIQENQVKHERTSNHSEE 369


>AV776003 
          Length = 354

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 73  LFKEHRHLIMRFNSLTLKGSHFTKHGYETE 102
           + K HRH ++R  S  L G H+ + G  T+
Sbjct: 166 VLKAHRHFLVR*VSTKLMGHHYLQIGIRTK 77


>TC14221 similar to GB|AAP37784.1|30725524|BT008425 At4g24690 {Arabidopsis
           thaliana;}, partial (12%)
          Length = 827

 Score = 25.4 bits (54), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (54%)
 Frame = -3

Query: 79  HLIMRFNSLTLKGSHFTKHGYETEEEEDMEILDKLEKL 116
           H  +RF      G+ F    Y+  + EDM++L KL+++
Sbjct: 279 HPRLRFAE*DQAGTLFQPCQYQHSDREDMKVLQKLQEV 166


>BP084469 
          Length = 485

 Score = 24.6 bits (52), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (50%)
 Frame = +3

Query: 4   IKLIILLAMKEYGYAHQNQQSMKDALAFVKGVEVEFEDKGDKYDEFL 50
           +K   LLA+  Y + + NQ+S K      K V   F ++  K+ +FL
Sbjct: 192 LKTFFLLAIYTYNFIYFNQESRKPT---CKVVIESFRNRSYKFLDFL 323


>TC11801 
          Length = 804

 Score = 24.6 bits (52), Expect = 5.8
 Identities = 15/46 (32%), Positives = 23/46 (49%)
 Frame = +2

Query: 80  LIMRFNSLTLKGSHFTKHGYETEEEEDMEILDKLEKLESALQLILE 125
           ++  FNS   +  HFT   Y     +D ++L   E+L  A  L+LE
Sbjct: 98  ILAEFNSTLSRNRHFTLCSYLLMLLQDNKVLTTTERL-IAFSLLLE 232


>TC18281 
          Length = 685

 Score = 24.6 bits (52), Expect = 5.8
 Identities = 17/38 (44%), Positives = 24/38 (62%), Gaps = 3/38 (7%)
 Frame = +3

Query: 100 ETEEEED---MEILDKLEKLESALQLILEILVIKKKEA 134
           E E + D   ME+  +LEKLE AL+   EI+V  KK++
Sbjct: 57  EREAKSDPQLMEVKVRLEKLEEALK---EIVVETKKQS 161


>AU251647 
          Length = 390

 Score = 24.3 bits (51), Expect = 7.6
 Identities = 13/45 (28%), Positives = 24/45 (52%), Gaps = 4/45 (8%)
 Frame = +3

Query: 91  GSHFTKHGYETEEEEDMEILDKLEKLESALQL----ILEILVIKK 131
           G H     + +EE+ED E++    + +   +L    I+E +V+KK
Sbjct: 183 GDHDNNKSFSSEEDEDCEVVSSNLQRDQERRL*SKPIIEGVVLKK 317


>TC16822 
          Length = 802

 Score = 24.3 bits (51), Expect = 7.6
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = +1

Query: 92  SHFTKHGYETEEEEDMEILDKL 113
           S FT H Y   +EED+ I D +
Sbjct: 223 SWFTWHSYGVSDEEDLSI*DSI 288


>BP029778 
          Length = 438

 Score = 23.9 bits (50), Expect = 10.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 114 EKLESALQLILEILVIKK 131
           EKLE  L++IL+ LVI+K
Sbjct: 175 EKLEDILRVILKYLVIQK 122


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,525,215
Number of Sequences: 28460
Number of extensions: 14152
Number of successful extensions: 76
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 134
length of database: 4,897,600
effective HSP length: 81
effective length of query: 53
effective length of database: 2,592,340
effective search space: 137394020
effective search space used: 137394020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)