BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135604.6 - phase: 0
(314 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine ... 371 e-104
BP043927 30 0.41
AW164001 30 0.69
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 28 1.5
BP043430 28 1.5
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 28 1.5
BI419972 28 1.5
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 28 2.0
BP051645 28 2.0
AV771287 28 2.0
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 2.6
TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%) 28 2.6
BP063033 28 2.6
TC20083 homologue to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (11%) 28 2.6
TC15452 similar to UP|SR40_YEAST (P32583) Suppressor protein SRP... 28 2.6
TC13711 weakly similar to GB|AAF22955.1|6665650|AF129510 DACH pr... 27 3.4
TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 gluc... 27 3.4
BP048490 27 4.5
AI967639 27 5.9
BP042557 27 5.9
>TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine P1
{Caenolestes fuliginosus;} , partial (49%)
Length = 1266
Score = 371 bits (953), Expect = e-104
Identities = 203/310 (65%), Positives = 236/310 (75%), Gaps = 9/310 (2%)
Frame = +1
Query: 1 MQVPLIDRLNDFQAGFNSLQQNPSFPSQITATSFNGIQSVSIAFNFCKWGAVILALVATF 60
MQVPLIDRLND Q GFNSLQ NPSFPS IT+ S GIQSVS+ +NFCKWGAV LALVATF
Sbjct: 67 MQVPLIDRLNDLQVGFNSLQ-NPSFPSPITS-SLAGIQSVSVVYNFCKWGAVFLALVATF 240
Query: 61 TSLINKVTIFIIHLRKKASSLPSITFDNDD--DFSSDD---EDNENDDIVSLSSSSEFED 115
+S+IN+VT+FII R K SLPSI+ +DD D SSDD +D E+DD SSSEF D
Sbjct: 241 SSIINRVTVFIIRFRSKPPSLPSISLFDDDFSDISSDDGDVDDLEDDDDTGNDSSSEF-D 417
Query: 116 DEPSMSSSSSFKD----FFRLTGNSNDYDVNNVFQTQNSGHRRQHSIGDFFSLLELANGD 171
DEPS S+SSSF FFR+ G + + + + ++Q R SIGD FSL ELA+ D
Sbjct: 418 DEPSASASSSFLRLDDFFFRVRGTAQNDESS---RSQIDTRHRSCSIGDIFSLAELASSD 588
Query: 172 NVVKLWDSIGFGLGLDFDEYEDGVISSTNPHAPLTSAAASPDVIVSAGEGAHGNLAVEIW 231
+VVKLWD+IGFGLGLDFD+YE+ + HAP +S+ ASP V+VSA EG+ GNL V IW
Sbjct: 589 SVVKLWDTIGFGLGLDFDDYEESPL-----HAPASSSTASPAVVVSAAEGSRGNLEVGIW 753
Query: 232 DTRLRRRKPSVVAEWGPTVGNTLRVESGGVQKVYVRDNGRQRLTVGDMRKVSFPLGNVTE 291
DTRLR+R+PSVVAEWGP VG T+RVESGGV KVYVRDNGR +TVGDMRKVS PLGNVTE
Sbjct: 754 DTRLRKRRPSVVAEWGPAVGKTVRVESGGVSKVYVRDNGRDGVTVGDMRKVSKPLGNVTE 933
Query: 292 SDADNTWWDA 301
SDADNTWWDA
Sbjct: 934 SDADNTWWDA 963
>BP043927
Length = 513
Score = 30.4 bits (67), Expect = 0.41
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +1
Query: 90 DDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFKDFFRLTGNSNDYDVNNVFQTQN 149
+ F++DD + DD ++S+FEDD + SS + +S D D ++ F+T
Sbjct: 58 EHFNNDDLEYVVDDGFYSDNASDFEDDHHAFSSDDKRSS---SSADSPDSDSDSDFETSG 228
Query: 150 SGHRRQHSIGDFFSLLELANGDNVVKL-WDSIGFGLGLDFDEY 191
+ + + S E NG ++ + W+ + + DEY
Sbjct: 229 NNSAKTDT-----SASEARNGKDIQGIPWEKLNYSR----DEY 330
>AW164001
Length = 447
Score = 29.6 bits (65), Expect = 0.69
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPS 119
D D+DF DD+D+++DD +DDEP+
Sbjct: 73 DVDEDFDDDDDDDDDDD----------DDDEPA 141
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 28.5 bits (62), Expect = 1.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 89 DDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFKD 128
D++ SDDED+E+DD S E DD S S S D
Sbjct: 3 DEEDDSDDEDDEDDD------SDEEMDDADSDSDESDSDD 104
>BP043430
Length = 493
Score = 28.5 bits (62), Expect = 1.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDE 117
DN+ D ++E++ NDD S S EF DDE
Sbjct: 334 DNEVDEEDEEEEDSNDDDDG-SESEEFNDDE 245
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 28.5 bits (62), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDE 117
+ DDD DDED ++DD E E+D+
Sbjct: 258 EEDDDEEEDDEDEDDDDDDDDDDDGEEEEDD 350
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSS 122
+ +DD DD+D+++DD + +DDE S
Sbjct: 273 EEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGS 380
Score = 26.9 bits (58), Expect = 4.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSS 125
D+D++ +DED+++DD E +DD+ S
Sbjct: 264 DDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGS 380
Score = 26.2 bits (56), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 79 SSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSS 125
SSLPS + + SS + + S SSSS S SSS S
Sbjct: 385 SSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSLS 245
>BI419972
Length = 498
Score = 28.5 bits (62), Expect = 1.5
Identities = 11/42 (26%), Positives = 21/42 (49%)
Frame = +1
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFKD 128
D++DD + DD+D+E +D +D+P + + D
Sbjct: 373 DDEDDDADDDDDDEGEDYSGDEGEEADPEDDPEANGAGGSDD 498
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDE 117
D DDD +D+D + DD + +DDE
Sbjct: 26 DEDDDDDGEDDDGDEDDDDDAPGGGDDDDDE 118
Score = 26.2 bits (56), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDE 117
++DDD DD+ +E+DD + + +D+E
Sbjct: 29 EDDDDDGEDDDGDEDDDDDAPGGGDDDDDEE 121
>BP051645
Length = 456
Score = 28.1 bits (61), Expect = 2.0
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Frame = -2
Query: 34 FNGIQSVSIAFNFCKWGAVILALVATFTSLINKVTIFIIHLRKKASSLPSITFDNDD--- 90
F G QSV + KWG + + S+ K + L + + P+ +D +D
Sbjct: 428 FGGSQSVRLKTAMVKWGPI-------YRSMTTKKEVDEFWLERAIMNTPTWWYDPEDLRE 270
Query: 91 ------DFSSDDEDNEND 102
++ SD +D+E++
Sbjct: 269 ALRNSYEYGSDSDDDEDE 216
>AV771287
Length = 525
Score = 28.1 bits (61), Expect = 2.0
Identities = 18/61 (29%), Positives = 30/61 (48%)
Frame = +2
Query: 23 PSFPSQITATSFNGIQSVSIAFNFCKWGAVILALVATFTSLINKVTIFIIHLRKKASSLP 82
P F ++I T N ++ + FC+ +IL ++ L+ + FIIH R +A P
Sbjct: 224 PCF*TEIDQTPANAVKCI-----FCES*DMILEVLPILELLVREGMHFIIHKRHEAPQRP 388
Query: 83 S 83
S
Sbjct: 389 S 391
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSS 125
++D+D D++++++DD + EDDE S S
Sbjct: 776 EDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKS 892
>TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%)
Length = 517
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +1
Query: 87 DNDDDFSSDDEDNENDD 103
D+DD DD+DNE+DD
Sbjct: 142 DDDDSEDEDDDDNEDDD 192
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/17 (52%), Positives = 15/17 (87%)
Frame = +1
Query: 87 DNDDDFSSDDEDNENDD 103
D+DDD S D++D++N+D
Sbjct: 136 DDDDDDSEDEDDDDNED 186
>BP063033
Length = 338
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (58%)
Frame = +1
Query: 144 VFQTQNSGHRRQHSIGDFFSLLELANGDNVVKLWDSI 180
+F+ G +R+H +G+F+ L L N + ++ +SI
Sbjct: 226 LFRLTKHGSQREHPLGEFYGXLILLNANXIIXGSNSI 336
>TC20083 homologue to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (11%)
Length = 562
Score = 27.7 bits (60), Expect = 2.6
Identities = 17/44 (38%), Positives = 24/44 (53%)
Frame = -3
Query: 81 LPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSS 124
+P ITF + FS+ +VSLSSS E D P+ +SS+
Sbjct: 512 IPDITFSMERKFSTK--------LVSLSSSEEESDFSPACASST 405
>TC15452 similar to UP|SR40_YEAST (P32583) Suppressor protein SRP40, partial
(4%)
Length = 589
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 83 SITFDNDDDFSSDDEDNENDDI-----VSLSSSSEFEDDEPSMSSSSSFKDFF 130
S+ D+DD DDED+++ + +SL+ S F S SS+ SF F
Sbjct: 561 SLALDSDDSEDEDDEDSQSGPVFILEALSLAFFSSFLFLFNSFSSALSFSSSF 403
>TC13711 weakly similar to GB|AAF22955.1|6665650|AF129510 DACH protein {Mus
musculus;} , partial (4%)
Length = 408
Score = 27.3 bits (59), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 85 TFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPS 119
+FD D DF DE++E D ++ SS +PS
Sbjct: 64 SFDGDSDFDKSDEESEKD--ITSSSKDVIRARKPS 162
>TC9068 similar to UP|SCWA_YEAST (Q04951) Probable family 17 glucosidase
SCW10 precursor (Soluble cell wall protein 10) ,
partial (6%)
Length = 1209
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 79 SSLPSITFDNDDDFSSDDEDNENDD 103
S P D+DDD DD+D+++DD
Sbjct: 71 SPKPDDDDDDDDDDDDDDDDDDDDD 145
Score = 26.9 bits (58), Expect = 4.5
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDD 103
D+DDD DD+D+++DD
Sbjct: 101 DDDDDDDDDDDDDDDDD 151
Score = 26.9 bits (58), Expect = 4.5
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDD 103
D+DDD DD+D+++DD
Sbjct: 104 DDDDDDDDDDDDDDDDD 154
Score = 26.9 bits (58), Expect = 4.5
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDD 103
D+DDD DD+D+++DD
Sbjct: 98 DDDDDDDDDDDDDDDDD 148
Score = 26.2 bits (56), Expect = 7.7
Identities = 10/39 (25%), Positives = 20/39 (50%)
Frame = +2
Query: 89 DDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFK 127
DDD DD+D+++DD + + +P + ++ K
Sbjct: 83 DDDDDDDDDDDDDDDDDDDDDDDDGDKKQPDSDTGTALK 199
>BP048490
Length = 452
Score = 26.9 bits (58), Expect = 4.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 76 KKASSLPSITFDNDDDFSSDDEDNENDDIVSL--SSSSEFEDDEPSMSSSSSFK 127
K ++ S + D+DD+ SSD + D + + S SSE D+E S+ + K
Sbjct: 93 KPSAVKKSASSDSDDEDSSDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQK 254
>AI967639
Length = 335
Score = 26.6 bits (57), Expect = 5.9
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 87 DNDDDFSSDDE--DNENDDIVSLSSSSEFEDDEP 118
D D+++ +DE D+++DD LS S + + D+P
Sbjct: 124 DQGDEYNLEDEEEDDDDDDDDDLSISEDSDSDKP 225
>BP042557
Length = 545
Score = 26.6 bits (57), Expect = 5.9
Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 6/82 (7%)
Frame = +2
Query: 135 NSNDYDVNNVFQTQNSGHRRQHSIGDFFSLLELANGDNVVKLWDSIG-FGLGL-----DF 188
N N++ ++F+ Q H F S L GD+V+ +W+ LG+
Sbjct: 203 NDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRSQ 382
Query: 189 DEYEDGVISSTNPHAPLTSAAA 210
V+SS + H L +AAA
Sbjct: 383 TIMPSSVLSSDSMHIGLLAAAA 448
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,998,721
Number of Sequences: 28460
Number of extensions: 66051
Number of successful extensions: 697
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of query: 314
length of database: 4,897,600
effective HSP length: 90
effective length of query: 224
effective length of database: 2,336,200
effective search space: 523308800
effective search space used: 523308800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC135604.6