TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135565.5 + phase: 0 /pseudo
         (93 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12181 similar to AAQ89616 (AAQ89616) At3g01370, partial (14%)        30  0.071
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        26  1.0
TC19464 similar to UP|Q84LR1 (Q84LR1) Root-specific metal transp...    25  1.8
TC13394                                                                24  3.9
TC8181 homologue to UP|O23310 (O23310) CCAAT-binding transcripti...    24  3.9
AV779929                                                               24  5.1
BF177810                                                               23  6.7
TC17593 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation fact...    23  8.7
TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment),...    23  8.7

>TC12181 similar to AAQ89616 (AAQ89616) At3g01370, partial (14%)
          Length = 682

 Score = 30.0 bits (66), Expect = 0.071
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 65  KVWRRCEVLRLTMNMGLSTANNNADQEEV 93
           K+W RCE++++ +  G+   N+    EE+
Sbjct: 356 KLWERCEIVKIAVKRGVQNTNSEIMAEEI 442


>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 26.2 bits (56), Expect = 1.0
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -2

Query: 47  VVRVATRQQIVSSAVNASKVWRRCEVLRLTMN 78
           ++ V  + + + + +N  K+WR+C+ +R   N
Sbjct: 188 II*VFPQHRNMKNRMNCRKIWRKCQTIRYRAN 93


>TC19464 similar to UP|Q84LR1 (Q84LR1) Root-specific metal transporter,
           partial (22%)
          Length = 503

 Score = 25.4 bits (54), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 54  QQIVSSAVNASKVWRRCEVLRLTMNMGLSTANNNADQE 91
           QQ++S A ++ ++   CE  ++  N  LST N  +D+E
Sbjct: 242 QQLISVASSSLQISFHCEKPKIENN**LSTCN*ESDEE 129


>TC13394 
          Length = 511

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 7/19 (36%), Positives = 13/19 (67%)
 Frame = +1

Query: 30  FGGKVFVLVGDFRQVLPVV 48
           FGG ++ +    R+VLP++
Sbjct: 322 FGGNIYCVYSQIREVLPII 378


>TC8181 homologue to UP|O23310 (O23310) CCAAT-binding transcription factor
           subunit A (At4g14540), partial (65%)
          Length = 1223

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = +3

Query: 55  QIVSSAVNASKVWRRCEVLRLTMNMGLSTANNNAD 89
           Q VSSA  AS  WR  E  R T+++G S +    D
Sbjct: 285 QRVSSANTASTTWRATESTR-TISVGASISATGLD 386


>AV779929 
          Length = 484

 Score = 23.9 bits (50), Expect = 5.1
 Identities = 13/32 (40%), Positives = 17/32 (52%)
 Frame = +2

Query: 38  VGDFRQVLPVVRVATRQQIVSSAVNASKVWRR 69
           VGD  QV P+V  +  +  V S  N  +VW R
Sbjct: 377 VGD*AQVQPLVSYSQVEARVDSLENQMQVWVR 472


>BF177810 
          Length = 431

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 14/43 (32%), Positives = 20/43 (45%)
 Frame = +1

Query: 46  PVVRVATRQQIVSSAVNASKVWRRCEVLRLTMNMGLSTANNNA 88
           P  R  T   + + AVNA   + +     L +N G+   NNNA
Sbjct: 97  PTARAVTGV-VTNPAVNAQVAFAKPNGANLPLNNGVPQNNNNA 222


>TC17593 similar to UP|Q8H0T8 (Q8H0T8) Eukaryotic initiation factor 4,
           eIF4-like protein, partial (19%)
          Length = 704

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 10/42 (23%), Positives = 21/42 (49%)
 Frame = -3

Query: 43  QVLPVVRVATRQQIVSSAVNASKVWRRCEVLRLTMNMGLSTA 84
           ++ P   +  R+++ S+    + +W R  +L L   +  STA
Sbjct: 501 EIFPRSIIWIRRKLSSTTTPVTAIWLRISIL*LRWRIAFSTA 376


>TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment), partial
           (63%)
          Length = 981

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 48  VRVATRQQIVSSAVNASKVWRRCEVLR 74
           +R++TR + ++S   +  V +RC VLR
Sbjct: 410 IRLSTRMENLTSR*KSRMVRQRCSVLR 490


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,281,306
Number of Sequences: 28460
Number of extensions: 10365
Number of successful extensions: 49
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of query: 93
length of database: 4,897,600
effective HSP length: 69
effective length of query: 24
effective length of database: 2,933,860
effective search space: 70412640
effective search space used: 70412640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)