BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.11 + phase: 0
(225 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP048861 42 9e-05
TC9493 homologue to UP|Q940S0 (Q940S0) T5E21.14/T5E21.14 (At1g14... 28 0.98
AV407175 28 1.3
BP032429 27 2.2
TC17322 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14... 27 2.9
BI418540 27 3.7
TC9683 similar to AAR23704 (AAR23704) At1g50260, partial (4%) 26 4.9
TC14682 homologue to UP|Q9AXK3 (Q9AXK3) Sucrose-phosphate syntha... 26 6.4
TC8444 homologue to UP|RUBB_PEA (P08927) RuBisCO subunit binding... 25 8.3
TC10206 similar to GB|BAC07387.2|29122876|AP003842 contains ESTs... 25 8.3
BP054334 25 8.3
TC14747 25 8.3
BP043629 25 8.3
>BP048861
Length = 551
Score = 42.0 bits (97), Expect = 9e-05
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 169 WKLRTNLKLPWRPLIAIDGSTSYELN-EDFKIVRHVESWNVSALEAVLQIFK 219
W+ L PWRP+++ G T Y + K+ RHVE WNV + QI +
Sbjct: 525 WRFSCILSFPWRPILSATGYTEYFFDVPSGKVCRHVEYWNVPKMALFKQILR 370
>TC9493 homologue to UP|Q940S0 (Q940S0) T5E21.14/T5E21.14
(At1g14670/T5E21.14), partial (19%)
Length = 680
Score = 28.5 bits (62), Expect = 0.98
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
Frame = -3
Query: 152 LKIEKEVESDTNFLRASWKLRTNLKLPWR-----PLIAIDGS 188
LK KE++++ NFL+ +++++T + WR L+A++GS
Sbjct: 456 LKYTKELQNNYNFLQNAYEMKTIALVDWRLERTKCLLALNGS 331
>AV407175
Length = 354
Score = 28.1 bits (61), Expect = 1.3
Identities = 14/49 (28%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Frame = +1
Query: 5 SLIKTRTPPLQLRKQHCSNSYTPS----SRNTCAIYNMVREKNETPQVL 49
+++ T+ PP Q +++HC TP S N + +++ N PQ L
Sbjct: 64 AIVATQLPPFQRQQRHCFGDSTPGEFPLSANPSIVLHVLTACNLDPQDL 210
>BP032429
Length = 468
Score = 27.3 bits (59), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 23 NSYTPSSRNTCAIYNMVREKNETPQVLKIAVSGVTELLRLFSPPQ 67
N +TP SRN + N+ EK ET + +T +R S P+
Sbjct: 175 NIWTPPSRNKSLLPNLSTEKMETNVASTLTPPEITADMRAASSPK 309
>TC17322 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
{Arabidopsis thaliana;}, partial (15%)
Length = 584
Score = 26.9 bits (58), Expect = 2.9
Identities = 16/38 (42%), Positives = 19/38 (49%), Gaps = 2/38 (5%)
Frame = -3
Query: 25 YTPSSRNTCAIYNMVREK--NETPQVLKIAVSGVTELL 60
Y PSSR CA +NM R + N L + S T LL
Sbjct: 120 YHPSSRKCCATHNMPRVQ*ANLAASPLSFSASNSTSLL 7
>BI418540
Length = 518
Score = 26.6 bits (57), Expect = 3.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 20 HCSNSYTPSSRNTCAIYNMVREKN 43
HC N TPSS TC++ N R +N
Sbjct: 355 HCRNPTTPSSFRTCSV-NTWRRRN 423
>TC9683 similar to AAR23704 (AAR23704) At1g50260, partial (4%)
Length = 628
Score = 26.2 bits (56), Expect = 4.9
Identities = 14/42 (33%), Positives = 21/42 (49%)
Frame = +3
Query: 108 NFTSSIYTENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASI 149
NF S+ NC++ + I FS Y R ++L V F C +
Sbjct: 468 NFISA*KCINCLYANARILFSIWQ*YNRRIELQVFHFSCLEV 593
>TC14682 homologue to UP|Q9AXK3 (Q9AXK3) Sucrose-phosphate synthase ,
partial (9%)
Length = 837
Score = 25.8 bits (55), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 16 LRKQHCSNSYTPSSRNTCAIYNMVREKNETP 46
L + C+ S+ PSS + C +YN N P
Sbjct: 355 LTRPQCA*SFLPSSSSLCDLYNHSLHHNLAP 447
>TC8444 homologue to UP|RUBB_PEA (P08927) RuBisCO subunit binding-protein
beta subunit, chloroplast precursor (60 kDa chaperonin
beta subunit) (CPN-60 beta), partial (53%)
Length = 949
Score = 25.4 bits (54), Expect = 8.3
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Frame = +2
Query: 70 SVLSDDIEKQNNDSTVS-----SVEDVLIIIKS-----DYDNDYFVTGNFTSSIYTENCI 119
S++++ + K V+ S E+ L +++ Y + YFVT + S+ ENC
Sbjct: 89 SMIAEALSKVGTKGVVTLEEGKSAENALYVVEGMQFDRGYISPYFVTDSDKMSVEFENC- 265
Query: 120 FEDPTIKFSGRDLYARNLKLLVPFFDCASIKLLKIEKEVESDTNFLRASWKLRTNLKL 177
++ + AR+L ++ +L I +++E + + KLR +LK+
Sbjct: 266 ---KSLIVDKKITNARDLINILEDAIRNGFPILIIAEDIEQEASATLVVNKLRGSLKI 430
>TC10206 similar to GB|BAC07387.2|29122876|AP003842 contains ESTs
C99731(E21182),D47967(S13788) receptor-like protein
kinase {Oryza sativa (japonica cultivar-group);} ,
partial (8%)
Length = 508
Score = 25.4 bits (54), Expect = 8.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 167 ASWKLRTNLKLPWR 180
+SWK TNL PWR
Sbjct: 381 SSWKFHTNLISPWR 340
>BP054334
Length = 402
Score = 25.4 bits (54), Expect = 8.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 146 CASIKLLKIEKEVESDTNFLRASWKLRTNLKLPW 179
C IKL + +E + +FLR KLR NL L W
Sbjct: 273 CLVIKLNSLNSSIEINHSFLR*VVKLRFNL-LSW 175
>TC14747
Length = 447
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 107 GNFTSSIYTENCIFEDPTIKFSGRDLYARNL 137
GN + + ++DP F+GRD Y R+L
Sbjct: 347 GNRALGTFAFSVRYKDPIRSFTGRDKYKRSL 439
>BP043629
Length = 562
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +2
Query: 10 RTPPLQLRKQHCSNSYTPSSRNTCAIY 36
R+PP L K H + TPSS N+ +
Sbjct: 239 RSPPNPLPKTHLLHQKTPSSANSSGFF 319
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,759,373
Number of Sequences: 28460
Number of extensions: 45546
Number of successful extensions: 235
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of query: 225
length of database: 4,897,600
effective HSP length: 87
effective length of query: 138
effective length of database: 2,421,580
effective search space: 334178040
effective search space used: 334178040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC135565.11