BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135565.1 - phase: 0
(150 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11702 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, p... 116 2e-27
TC13207 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, p... 99 4e-22
TC17066 homologue to UP|Q8W156 (Q8W156) Deoxycytidine deaminase,... 92 3e-20
TC10712 similar to AAR23701 (AAR23701) At1g68720, partial (9%) 37 0.001
AV414989 33 0.021
AV771990 28 0.88
TC9279 similar to UP|Q8SA69 (Q8SA69) Transcription factor EIL1, ... 28 0.88
TC12706 UP|Q7X9C0 (Q7X9C0) NIN-like protein 2, complete 27 1.5
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 27 2.0
BP061347 26 3.3
BP055991 26 3.3
TC8857 similar to UP|Q8LKG0 (Q8LKG0) Drm4, partial (84%) 25 4.3
BP072253 25 7.4
TC14356 25 7.4
BP059571 25 7.4
TC17751 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide r... 24 9.7
>TC11702 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(95%)
Length = 744
Score = 116 bits (290), Expect = 2e-27
Identities = 67/149 (44%), Positives = 86/149 (56%), Gaps = 6/149 (4%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M LRN +PTAHAE+ AIREACKKL+++ L+ CE+Y+SCEPCPMCFGAIH S+VK
Sbjct: 263 MVLRNNDPTAHAEVTAIREACKKLNQIELSECEIYSSCEPCPMCFGAIHLSRVK------ 424
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFHK 117
R+VYGA AEAA +IGF ++I +GT F++
Sbjct: 425 -----------------------------RLVYGAKAEAAIAIGFDDFIADALRGTGFYQ 517
Query: 118 ---FEIKKIDGIAAEIAEEVFEKTKDKVK 143
EIK+ DG A IA F + K KV+
Sbjct: 518 KACLEIKRADGNEAIIA*RSFSENKRKVQ 604
>TC13207 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(78%)
Length = 661
Score = 98.6 bits (244), Expect = 4e-22
Identities = 50/109 (45%), Positives = 63/109 (56%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRL 60
M LRN +PTAHAE+ AIREAC+KL+++ LA CE+Y SCEPCPMCFGAIH S++K
Sbjct: 419 MVLRNTDPTAHAEVTAIREACQKLNQIELADCEIYASCEPCPMCFGAIHLSRIK------ 580
Query: 61 SFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVYGATAEAARSIGFSNYI 109
R+VYG AEAA +IGF ++I
Sbjct: 581 -----------------------------RLVYGVEAEAAIAIGFDDFI 640
>TC17066 homologue to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(49%)
Length = 498
Score = 92.4 bits (228), Expect = 3e-20
Identities = 53/125 (42%), Positives = 70/125 (55%), Gaps = 6/125 (4%)
Frame = +2
Query: 23 KLDKVSLAGCELYTSCEPCPMCFGAIHFSKVKASMRRLSFCLHNYTFLQSVLNYIDITYL 82
KL+++ L+ CE+Y SCEPCPMCFGAIH S++K
Sbjct: 2 KLNQIELSDCEIYASCEPCPMCFGAIHLSRIK---------------------------- 97
Query: 83 SYIHIKQRMVYGATAEAARSIGFSNYIG---KGTDFH---KFEIKKIDGIAAEIAEEVFE 136
R+VYGA AEAA +IGF ++I +GT F+ + EIK+ DG A IAEEVF+
Sbjct: 98 -------RLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNGALIAEEVFQ 256
Query: 137 KTKDK 141
KTK+K
Sbjct: 257 KTKEK 271
>TC10712 similar to AAR23701 (AAR23701) At1g68720, partial (9%)
Length = 553
Score = 37.4 bits (85), Expect = 0.001
Identities = 19/37 (51%), Positives = 23/37 (61%)
Frame = +1
Query: 17 IREACKKLDKVSLAGCELYTSCEPCPMCFGAIHFSKV 53
IREA K L L+ LY + EPCPMC GAI ++V
Sbjct: 4 IREASKLLHTWRLSETTLYVTLEPCPMCAGAILQARV 114
>AV414989
Length = 416
Score = 33.1 bits (74), Expect = 0.021
Identities = 14/19 (73%), Positives = 16/19 (83%)
Frame = +2
Query: 1 MFLRNKEPTAHAEIIAIRE 19
M LRN +PTAHAE+ AIRE
Sbjct: 107 MVLRNNDPTAHAEVTAIRE 163
>AV771990
Length = 466
Score = 27.7 bits (60), Expect = 0.88
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 47 AIHFSKVKASMRRLSFCLHNYTFLQSVLNY 76
+I S+ AS + F LHN+TF +L+Y
Sbjct: 197 SIKISQSMASKTIIKFSLHNHTFTPKILSY 286
>TC9279 similar to UP|Q8SA69 (Q8SA69) Transcription factor EIL1, partial
(39%)
Length = 713
Score = 27.7 bits (60), Expect = 0.88
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = -2
Query: 57 MRRLSFCLHNYTFLQSVLNYIDITYLSYIHIKQRMV 92
MRRL H+ L V+ ++DI S+ HIK R++
Sbjct: 571 MRRLLNWQHSPHSLHPVIGWMDILRFSFHHIKVRLI 464
>TC12706 UP|Q7X9C0 (Q7X9C0) NIN-like protein 2, complete
Length = 3814
Score = 26.9 bits (58), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = -3
Query: 37 SCEPCPMCFGAIHFSKVKASMRRLSFCLHNYTFLQSVLNYIDI 79
SC CP +G I K++A+ L H+ FLQ +N+I++
Sbjct: 2399 SCHECP--YGGI---KLQATFHSLDRVKHSLYFLQ*TINFINL 2286
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 26.6 bits (57), Expect = 2.0
Identities = 11/21 (52%), Positives = 16/21 (75%)
Frame = -2
Query: 103 IGFSNYIGKGTDFHKFEIKKI 123
+GFSNYI K + KF+IK++
Sbjct: 796 LGFSNYILKQHKYTKFKIKQV 734
>BP061347
Length = 277
Score = 25.8 bits (55), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 25 DKVSLAGCELYTSCEPCPMCFG 46
D VS+ C Y S PCP+C+G
Sbjct: 100 DVVSINSCWRYASV-PCPLCWG 38
>BP055991
Length = 500
Score = 25.8 bits (55), Expect = 3.3
Identities = 17/66 (25%), Positives = 30/66 (44%), Gaps = 4/66 (6%)
Frame = -1
Query: 7 EPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCFG----AIHFSKVKASMRRLSF 62
EP++ +A++ C+K + + A S E C FG + S S++ L +
Sbjct: 467 EPSSIGLNVALKPTCEKSESKAAAS----KSLEDCSDTFGIPEAVVTSSMWSCSVKSLKY 300
Query: 63 CLHNYT 68
C +YT
Sbjct: 299 CXASYT 282
>TC8857 similar to UP|Q8LKG0 (Q8LKG0) Drm4, partial (84%)
Length = 772
Score = 25.4 bits (54), Expect = 4.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Frame = +3
Query: 13 EIIAIREACKK-----------LDKVSLAGCELYTSCEPCPMCFGAIHF 50
+I +RE CK+ + S+ L+ + C CFGAIHF
Sbjct: 363 DIRCVREGCKRKKTKPFFSFPCVRNESMITLSLHG*PKMCLFCFGAIHF 509
>BP072253
Length = 390
Score = 24.6 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = -3
Query: 29 LAGCELYTSCEPCPMCFGAIHFSKVKASMR 58
L C LY PC +CF + F ++++S++
Sbjct: 379 LLQCSLY*QPLPC*ICFAFLVF*RIQSSVK 290
>TC14356
Length = 1330
Score = 24.6 bits (52), Expect = 7.4
Identities = 13/44 (29%), Positives = 22/44 (49%)
Frame = -1
Query: 2 FLRNKEPTAHAEIIAIREACKKLDKVSLAGCELYTSCEPCPMCF 45
FLR++ TA+ + + CK L S A + +T+ P + F
Sbjct: 814 FLRSEPETANCSERSCQRKCKSLPSYSRAAHQPHTTLSPPSLRF 683
>BP059571
Length = 386
Score = 24.6 bits (52), Expect = 7.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 21 CKKLDKVSLAGCELYTSCEP 40
C + DKV CEL SC P
Sbjct: 293 CPRNDKVVTPPCELVDSCNP 352
>TC17751 weakly similar to UP|Q7XHN9 (Q7XHN9) Tetratricopeptide
repeat(TPR)-containing protein-like, partial (8%)
Length = 550
Score = 24.3 bits (51), Expect = 9.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 44 CFGAIHFSKVKASMRR-LSFCLHNYTFLQSVLNYIDITYLSYIHIKQRMVY 93
C+G+ S+++ +S+CL + FLQ +L + YL Y +K ++Y
Sbjct: 351 CYGSSSCSQLQLK*NFFVSYCLTSEHFLQYLLKTLGAPYL-YSFLKALLIY 500
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,533,751
Number of Sequences: 28460
Number of extensions: 34627
Number of successful extensions: 268
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of query: 150
length of database: 4,897,600
effective HSP length: 82
effective length of query: 68
effective length of database: 2,563,880
effective search space: 174343840
effective search space used: 174343840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC135565.1