TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135505.7 - phase: 0 /pseudo
         (109 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13100                                                                26  0.87
TC18078                                                                25  2.5
TC10183 similar to UP|Q9LV44 (Q9LV44) Similarity to signal pepti...    25  2.5
BI420475                                                               23  5.6
AV772566                                                               23  7.4
TC11723 similar to UP|Q9SC91 (Q9SC91) Glutamine synthetase I  (G...    23  7.4
TC17800 similar to UP|KIWI_ARATH (O65154) RNA polymerase II tran...    23  7.4
TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara...    23  9.6
CB827481                                                               23  9.6
TC8250 weakly similar to GB|AAO24559.1|27808558|BT003127 At5g398...    23  9.6

>TC13100 
          Length = 429

 Score = 26.2 bits (56), Expect = 0.87
 Identities = 10/22 (45%), Positives = 15/22 (67%)
 Frame = -3

Query: 52  VFTVPVSFTRLRRTQIERASAW 73
           +FT P+S T LRR+++   S W
Sbjct: 262 IFTSPISTTSLRRSEV*SISLW 197


>TC18078 
          Length = 785

 Score = 24.6 bits (52), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (69%)
 Frame = -1

Query: 5   DIKVRPFIAAIANKACR 21
           D  +RPF AA+ NKA R
Sbjct: 356 DAGIRPFTAAVKNKALR 306


>TC10183 similar to UP|Q9LV44 (Q9LV44) Similarity to signal peptidase,
           partial (24%)
          Length = 497

 Score = 24.6 bits (52), Expect = 2.5
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 4   LDIKVRPFIAAIANKACRSTTAVELLGKFLVKLKFSVEIR--VKIPIRKVVFTV 55
           L I V P +  IA     S+T V+        +  S E+   VKI +RKV  TV
Sbjct: 298 LHIPVTPAVVVIAAAVSASSTRVQHRLCIFAGIPESFEVGSPVKIEVRKVAVTV 137


>BI420475 
          Length = 564

 Score = 23.5 bits (49), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +3

Query: 40 VEIRVKIPIRKVVFTVPVSFTRLRRTQIERAS 71
          + + VKI IRK+ F V   F RL   ++ + S
Sbjct: 6  ISVMVKILIRKLHFMVTEDFLRLTLVELLQPS 101


>AV772566 
          Length = 518

 Score = 23.1 bits (48), Expect = 7.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 20  CRSTTAVELLGKFLVKLKFSVEIRVKIPI 48
           CR    + L    LVK+K  V+++VK+ +
Sbjct: 435 CRQMPMMSLR*PRLVKVKVKVKVKVKVKV 349


>TC11723 similar to UP|Q9SC91 (Q9SC91) Glutamine synthetase I
           (Glutamate--ammonia ligase) , partial (17%)
          Length = 528

 Score = 23.1 bits (48), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 28  LLGKFLVKLKFSVEIRVKIPIRKVVFTV 55
           LLG    KLK  ++++VK+  R + F +
Sbjct: 520 LLGSVNKKLKLKLKLKVKVEHRNIGFHI 437


>TC17800 similar to UP|KIWI_ARATH (O65154) RNA polymerase II transcriptional
           coactivator KIWI, partial (60%)
          Length = 592

 Score = 23.1 bits (48), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 42  IRVKIPIRKVVFTVPV--SFTRLRRT 65
           +R K P RK++  +P+  S  R RRT
Sbjct: 111 LRPKSPSRKILMKIPIPSSSARFRRT 188


>TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
           thaliana;}, partial (41%)
          Length = 909

 Score = 22.7 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = -2

Query: 46  IPIRKVVFTVPVSFTRLRRTQIERASAWA 74
           I +  V+ TVP  F  +RRT   + S W+
Sbjct: 587 IRVISVIRTVPSIFFGIRRTNDIKHSTWS 501


>CB827481 
          Length = 556

 Score = 22.7 bits (47), Expect = 9.6
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3

Query: 37 KFSVEIRVKIPIRKVVFTVPVSFT 60
          ++ + +R++IP  ++ +TVP  +T
Sbjct: 18 EWQITVRIRIPKWRLRWTVPTEYT 89


>TC8250 weakly similar to GB|AAO24559.1|27808558|BT003127 At5g39890
           {Arabidopsis thaliana;}, partial (16%)
          Length = 661

 Score = 22.7 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = -3

Query: 46  IPIRKVVFTVPVSFTRLRRTQIERASAWA 74
           I +  V+ TVP  F  +RRT   + S W+
Sbjct: 137 IRVISVIRTVPSIFFGIRRTNDIKHSTWS 51


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,373,247
Number of Sequences: 28460
Number of extensions: 12599
Number of successful extensions: 77
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of query: 109
length of database: 4,897,600
effective HSP length: 85
effective length of query: 24
effective length of database: 2,478,500
effective search space: 59484000
effective search space used: 59484000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)