BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135505.16 - phase: 1 /pseudo
(323 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14070 homologue to UP|G3PC_PEA (P34922) Glyceraldehyde 3-phosp... 607 e-174
TC14071 similar to UP|G3P_ATRNU (P34783) Glyceraldehyde 3-phosph... 340 2e-94
TC7836 homologue to UP|G3PA_PEA (P12858) Glyceraldehyde 3-phosph... 283 4e-77
AV422346 251 9e-68
TC16166 homologue to UP|G3PC_MAGLI (P26518) Glyceraldehyde 3-pho... 243 2e-65
TC8402 homologue to GB|CAA42103.1|1345501|AMGADPH glycolytic gly... 212 3e-59
TC8904 homologue to UP|G3PB_PEA (P12859) Glyceraldehyde 3-phosph... 206 3e-54
TC9559 similar to GB|AAD30223.1|4835756|T8K14 Is a member of the... 120 3e-28
BP068838 99 1e-21
BP070548 87 5e-18
TC17854 homologue to UP|G3PX_HORVU (P26517) Glyceraldehyde 3-pho... 69 8e-13
TC7837 similar to UP|G3PA_PEA (P12858) Glyceraldehyde 3-phosphat... 55 2e-08
AV774897 52 1e-07
AV770678 48 3e-06
TC14072 similar to GB|CAA42103.1|1345501|AMGADPH glycolytic glyc... 42 1e-04
AV765024 37 0.006
TC14108 similar to UP|CAHC_PEA (P17067) Carbonic anhydrase, chlo... 29 0.94
TC14944 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA),... 28 1.6
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-... 27 6.1
TC15883 similar to GB|AAP42727.1|30984528|BT008714 At4g14930 {Ar... 26 8.0
>TC14070 homologue to UP|G3PC_PEA (P34922) Glyceraldehyde 3-phosphate
dehydrogenase, cytosolic , complete
Length = 1414
Score = 607 bits (1564), Expect = e-174
Identities = 304/323 (94%), Positives = 312/323 (96%)
Frame = +2
Query: 1 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELT 60
KIKIGINGFGRIGRLVARVAL RDDVELVAVNDPFITTDYMTYMFKYDSVHG WK+ E+T
Sbjct: 56 KIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHEVT 235
Query: 61 VKDSKTLLFGEKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVI 120
VKD+ TLLFG+KPVTVFA+RNPEEIPW TGADI+VESTGVFTDKDKAAAHLKGGAKKVI
Sbjct: 236 VKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVESTGVFTDKDKAAAHLKGGAKKVI 415
Query: 121 ISAPSKDAPMFVVGVNEKEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 180
ISAPSKDAPMFVVGVNE EYKPE +IISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS
Sbjct: 416 ISAPSKDAPMFVVGVNEHEYKPELNIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 595
Query: 181 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 240
ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV
Sbjct: 596 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 775
Query: 241 SVVDLTVRLEKPATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAG 300
SVVDLTVRLEK ATYDQIKAAIKEESEG LKGILGYTEDDVVSTDFIGD RSSIFDAKAG
Sbjct: 776 SVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAG 955
Query: 301 IALNDNFVKLVSWYDNELGYSTR 323
IALNDNFVKLVSWYDNE+GYSTR
Sbjct: 956 IALNDNFVKLVSWYDNEMGYSTR 1024
>TC14071 similar to UP|G3P_ATRNU (P34783) Glyceraldehyde 3-phosphate
dehydrogenase (GAPDH) , partial (51%)
Length = 760
Score = 340 bits (871), Expect = 2e-94
Identities = 167/182 (91%), Positives = 174/182 (94%)
Frame = +2
Query: 1 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELT 60
KIKIGINGFGRIGRLVARVAL RDDVELVAVNDPFITTDYMTYMFKYDSVHG WK+ E+T
Sbjct: 104 KIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHEVT 283
Query: 61 VKDSKTLLFGEKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVI 120
VKD+ TLLFG+KPVTVFA+RNPEEIPW TGADI+VESTGVFTDKDKAAAHLKGGAKKVI
Sbjct: 284 VKDANTLLFGDKPVTVFANRNPEEIPWGQTGADIVVESTGVFTDKDKAAAHLKGGAKKVI 463
Query: 121 ISAPSKDAPMFVVGVNEKEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 180
ISAPSKDAPMFVVGVNE EYKPE +IISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS
Sbjct: 464 ISAPSKDAPMFVVGVNEHEYKPELNIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 643
Query: 181 IT 182
IT
Sbjct: 644 IT 649
Score = 77.4 bits (189), Expect = 3e-15
Identities = 38/39 (97%), Positives = 38/39 (97%)
Frame = -2
Query: 193 AKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM 231
AKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT M
Sbjct: 759 AKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTVM 643
>TC7836 homologue to UP|G3PA_PEA (P12858) Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A) ,
partial (89%)
Length = 1513
Score = 283 bits (723), Expect = 4e-77
Identities = 152/326 (46%), Positives = 209/326 (63%), Gaps = 3/326 (0%)
Frame = +3
Query: 1 KIKIGINGFGRIGRLVARVALKRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKNDE 58
K+K+ INGFGRIGR R R D ++++A+ND +++ KYDS G + D
Sbjct: 294 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFGADV 470
Query: 59 LTVKDSKTLLFGEKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKK 118
V + G K + V + RNP +PW G D+++E TGVF D++ A H++ GAKK
Sbjct: 471 KPVGTDGISVDG-KVIKVVSDRNPANLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKK 647
Query: 119 VIISAPSK-DAPMFVVGVNEKEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTT 177
V+I+AP K D P +VVGVN Y + DIISNASCTTNCLAP KV++ +FGI++G MTT
Sbjct: 648 VLITAPGKGDIPTYVVGVNADAYSHDDDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 827
Query: 178 VHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 237
HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 828 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPT 1004
Query: 238 VDVSVVDLTVRLEKPATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDA 297
+VSVVDL V++ K +++ AA +E ++ L GIL ++ +VS DF SS D+
Sbjct: 1005PNVSVVDLVVQVTKKTFAEEVNAAFRESADNELNGILSVCDEPLVSVDFRCTDVSSTVDS 1184
Query: 298 KAGIALNDNFVKLVSWYDNELGYSTR 323
+ + D+ VK+++WYDNE GYS R
Sbjct: 1185SLTMVMGDDMVKVIAWYDNEWGYSQR 1262
>AV422346
Length = 465
Score = 251 bits (642), Expect = 9e-68
Identities = 121/154 (78%), Positives = 136/154 (87%)
Frame = +2
Query: 80 RNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKE 139
R+P EIPW+ GAD ++ES+GVFT +KA++HLK GAKKVIISAPS DAPMFVVGVNEK
Sbjct: 2 RDPAEIPWSDFGADYVIESSGVFTTLEKASSHLKAGAKKVIISAPSADAPMFVVGVNEKT 181
Query: 140 YKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGG 199
Y P DI+SNASCTTNCLAPLAKV+++ FGI+EGLMTTVH+ TATQKTVDGPS KDWRGG
Sbjct: 182 YNPSMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGG 361
Query: 200 RAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAF 233
R A+ NIIPSSTGAAKAVGKVLP LNGKLTGMAF
Sbjct: 362 RGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAF 463
>TC16166 homologue to UP|G3PC_MAGLI (P26518) Glyceraldehyde 3-phosphate
dehydrogenase, cytosolic , partial (40%)
Length = 476
Score = 243 bits (621), Expect = 2e-65
Identities = 117/137 (85%), Positives = 128/137 (93%)
Frame = +3
Query: 1 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELT 60
KIKIGINGFGRIGRLVARVAL+R+DVELVA+NDPFITTDYM+YMFKYD+VHGQWK+ ++
Sbjct: 66 KIKIGINGFGRIGRLVARVALQRNDVELVAINDPFITTDYMSYMFKYDTVHGQWKHFDVK 245
Query: 61 VKDSKTLLFGEKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVI 120
VKDSKTLLFG+K VTVF RNPEEIPW GAD +VESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 246 VKDSKTLLFGDKAVTVFGTRNPEEIPWGEVGADFVVESTGVFTDKDKAAAHLKGGAKKVV 425
Query: 121 ISAPSKDAPMFVVGVNE 137
ISAPSKDAPMFVVGVNE
Sbjct: 426 ISAPSKDAPMFVVGVNE 476
>TC8402 homologue to GB|CAA42103.1|1345501|AMGADPH glycolytic
glyceraldehyde 3-phosphate dehydrogenase {Antirrhinum
majus;} , partial (43%)
Length = 700
Score = 212 bits (539), Expect(2) = 3e-59
Identities = 107/126 (84%), Positives = 116/126 (91%)
Frame = +3
Query: 198 GGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPATYDQ 257
G + FNIIPSST AAKAVGKVLP+LNGKLTGM+FRVPTVDVSVVDLTVRLEK A+Y+Q
Sbjct: 24 GWESCLFNIIPSSTVAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAASYEQ 203
Query: 258 IKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDNFVKLVSWYDNE 317
IKAAI EESEG LKGILGY E+DVVSTDF+GD+RSSIFDAKAGI+LNDNFVKLVSWYDNE
Sbjct: 204 IKAAIMEESEGKLKGILGYIEEDVVSTDFVGDSRSSIFDAKAGISLNDNFVKLVSWYDNE 383
Query: 318 LGYSTR 323
GYSTR
Sbjct: 384 WGYSTR 401
Score = 33.1 bits (74), Expect(2) = 3e-59
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +1
Query: 190 GPSAKDWRGGRAAS 203
GPS+KDWRGGRAAS
Sbjct: 1 GPSSKDWRGGRAAS 42
>TC8904 homologue to UP|G3PB_PEA (P12859) Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B) ,
partial (69%)
Length = 978
Score = 206 bits (525), Expect = 3e-54
Identities = 115/229 (50%), Positives = 154/229 (67%), Gaps = 5/229 (2%)
Frame = +3
Query: 1 KIKIGINGFGRIGRLVARVALKRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKNDE 58
K+K+ INGFGRIGR R R D +E++ VND + +++ KYDS+ G +K D
Sbjct: 297 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKN-ASHLLKYDSMLGTFKAD- 470
Query: 59 LTVKDSKTLLFGEKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKK 118
+ + + T+ KP+ V A+R+P ++PWA G DI++E TGVF D A H++ GAKK
Sbjct: 471 VKILNENTITVDGKPIKVVANRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 650
Query: 119 VIISAPSK--DAPMFVVGVNEKEYKPEF-DIISNASCTTNCLAPLAKVINDRFGIVEGLM 175
VII+AP+K D P +VVGVNE +Y DIISNASCTTNCLAP K++++ FGIV+G M
Sbjct: 651 VIITAPAKGADIPTYVVGVNEGDYGHNVADIISNASCTTNCLAPFVKILDEEFGIVKGTM 830
Query: 176 TTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPAL 224
TT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L
Sbjct: 831 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQL 974
>TC9559 similar to GB|AAD30223.1|4835756|T8K14 Is a member of the PF|00044
glyceraldehyde 3-phosphate dehydrogenase family. ESTs
gb|T43985, gb|N38667, gb|N65037, gb|AA713069 and
gb|AI099548 come from this gene. {Arabidopsis
thaliana;}, partial (22%)
Length = 656
Score = 120 bits (301), Expect = 3e-28
Identities = 58/80 (72%), Positives = 69/80 (85%)
Frame = +1
Query: 244 DLTVRLEKPATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIAL 303
DLT RL+K A+Y+ +KAAI SEG LKGILGYT++DVVS DF+GD+RSSIFDAKAGIAL
Sbjct: 1 DLTCRLQKNASYEDVKAAI*RASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIAL 180
Query: 304 NDNFVKLVSWYDNELGYSTR 323
+ +FVK+VSWYDNE GYS R
Sbjct: 181 SASFVKMVSWYDNEWGYSNR 240
>BP068838
Length = 619
Score = 98.6 bits (244), Expect = 1e-21
Identities = 49/59 (83%), Positives = 55/59 (93%)
Frame = -3
Query: 240 VSVVDLTVRLEKPATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAK 298
VSVVDLTVRLEK A+Y+QI+AAI EESEG LKGILGY E+DVVSTDF+GD+RSSIFDAK
Sbjct: 617 VSVVDLTVRLEKAASYEQIQAAIMEESEGKLKGILGYIEEDVVSTDFVGDSRSSIFDAK 441
>BP070548
Length = 403
Score = 86.7 bits (213), Expect = 5e-18
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +2
Query: 1 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELT 60
K +IGING GR+GRLV R+A RDD+++VA+NDPFI YM YMFKYDS HG +K +
Sbjct: 182 KTRIGINGLGRMGRLVFRIATSRDDIDVVAINDPFIDAKYMAYMFKYDSTHGPFKG-SIK 358
Query: 61 VKDSKTLLFGEKPV 74
V D TL K V
Sbjct: 359 VLDDNTLEINGKQV 400
>TC17854 homologue to UP|G3PX_HORVU (P26517) Glyceraldehyde 3-phosphate
dehydrogenase, cytosolic , partial (14%)
Length = 505
Score = 69.3 bits (168), Expect = 8e-13
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = +3
Query: 286 FIGDTRSSIFDAKAGIALNDNFVKLVSWYDNELGYSTR 323
F+GD RSSIFDAKAGI+LN++FVKLVSWYDNE GYS+R
Sbjct: 3 FVGDCRSSIFDAKAGISLNNHFVKLVSWYDNEWGYSSR 116
>TC7837 similar to UP|G3PA_PEA (P12858) Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A) ,
partial (19%)
Length = 467
Score = 55.1 bits (131), Expect = 2e-08
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +2
Query: 230 GMAFRVPTVDVSVVDLTVRLEKPATYDQIKAAIKEESE-GNLKGILGYTEDDVVSTDFIG 288
G+A RVPT +SVVDL V++ K +++ AA+ E + L GIL ++ + S +G
Sbjct: 2 GLALRVPTPTLSVVDLVVQVPKKTFAEEVNAALHERVQTTELHGILSVCDEPLRSVRLLG 181
Query: 289 DTR-SSIFDAKAGIA-LNDNFVKLVSWYDNELGYSTR 323
D+ +A VK+++WYDNE GYS R
Sbjct: 182 ALMCPPPLDSSLTLAPWEMTLVKVIAWYDNEWGYSPR 292
>AV774897
Length = 468
Score = 52.4 bits (124), Expect = 1e-07
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = -1
Query: 241 SVVDLTVRLEKPATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSS-----IF 295
SVVDL V++ +++ AA +E ++ L GIL +++ +++ T S IF
Sbjct: 468 SVVDLVVQVTSKTFAEEVNAAFRESADHELNGILSLSDEPLLAQ*TFRCTDVSSHP*LIF 289
Query: 296 DAKAGIALNDNFVKLVSWYDNELGYSTR 323
D + L D+ VK+++WYDNE GYS R
Sbjct: 288 DHGS---LGDDMVKVIAWYDNEWGYSQR 214
>AV770678
Length = 540
Score = 47.8 bits (112), Expect = 3e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -3
Query: 258 IKAAIKEESEGNLKGILGYTEDDVVSTD 285
I+AAI EESEG LKGILGY E+DVVSTD
Sbjct: 538 IQAAIMEESEGKLKGILGYIEEDVVSTD 455
>TC14072 similar to GB|CAA42103.1|1345501|AMGADPH glycolytic glyceraldehyde
3-phosphate dehydrogenase {Antirrhinum majus;} , partial
(8%)
Length = 374
Score = 42.4 bits (98), Expect = 1e-04
Identities = 18/21 (85%), Positives = 20/21 (94%)
Frame = +3
Query: 302 ALNDNFVKLVSWYDNELGYST 322
ALNDNFV LVSWYD+E+GYST
Sbjct: 3 ALNDNFV*LVSWYDHEMGYST 65
>AV765024
Length = 343
Score = 36.6 bits (83), Expect = 0.006
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 273 ILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDNFVKLVSWYDNELGYSTR 323
IL ++ V DF SS D+ + + D K+++WYDNE G+S R
Sbjct: 343 ILSVCDEPPVPVDFRCSDVSSPADSSLPMVMEDPMPKVIAWYDNEWGHSQR 191
>TC14108 similar to UP|CAHC_PEA (P17067) Carbonic anhydrase, chloroplast
precursor (Carbonate dehydratase) , partial (98%)
Length = 1458
Score = 29.3 bits (64), Expect = 0.94
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 268 GNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGI 301
G +KG+L + D STDFI D S AKA +
Sbjct: 718 GGIKGLLSFPFDGTTSTDFIEDWVSIGLPAKAKV 819
>TC14944 similar to UP|LEC_LOTTE (P19664) Anti-H(O) lectin (LTA), partial
(85%)
Length = 1155
Score = 28.5 bits (62), Expect = 1.6
Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 13/181 (7%)
Frame = +2
Query: 146 IISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFN 205
+ SN S LA L ++ + VEG+ T + AK W GR A
Sbjct: 44 LYSNPSTLKVVLASLLLLLTIKVNSVEGVSFNFTKFTDDGSLILQGDAKIWTDGRLA--- 214
Query: 206 IIPSSTGAAKAVGKVL-----PALNGKLTGMAFRVPTVDVSVVDLT-VRLEKPATYDQIK 259
+PS K +VL P + +A V + V D+ ++ +
Sbjct: 215 -LPSDPLIGKTTSRVLYATPVPIWDSTTGSVASFVSSFSFVVSDVPGYKISDGLVFFLAP 391
Query: 260 --AAIKEESEGNLKGIL----GYTEDDVVSTDFIGDTRSSIFDAKAGIALNDNF-VKLVS 312
I SEG GIL GY + V D +TR F GI +N + LV
Sbjct: 392 WGTTIPPNSEGKNLGILDEKNGYNQFVAVEFDSYNNTRDPTF-RHIGIDVNSVMSMNLVK 568
Query: 313 W 313
W
Sbjct: 569 W 571
>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
protein, partial (97%)
Length = 2230
Score = 26.6 bits (57), Expect = 6.1
Identities = 18/73 (24%), Positives = 31/73 (41%)
Frame = +3
Query: 46 KYDSVHGQWKNDELTVKDSKTLLFGEKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDK 105
++ +V+G W ++ + KP+TV+ +N ++ T D IV+ G
Sbjct: 957 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNRVDLARDFTYIDDIVK--GCVGSL 1130
Query: 106 DKAAAHLKGGAKK 118
D A G KK
Sbjct: 1131 DTAGKSTGSGGKK 1169
>TC15883 similar to GB|AAP42727.1|30984528|BT008714 At4g14930 {Arabidopsis
thaliana;}, partial (35%)
Length = 1011
Score = 26.2 bits (56), Expect = 8.0
Identities = 23/83 (27%), Positives = 35/83 (41%)
Frame = +2
Query: 142 PEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRA 201
P + ++ TTN L + V +T +H ITA Q +DG ++ G
Sbjct: 53 PGLRALVHSLVTTNLFNILVCAPDSEKSAVSHGITWLHPITAKQIQIDGATSAFAVSGTP 232
Query: 202 ASFNIIPSSTGAAKAVGKVLPAL 224
A +S G +KA+ LP L
Sbjct: 233 ADC----TSLGVSKALFPTLPDL 289
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,297,336
Number of Sequences: 28460
Number of extensions: 45909
Number of successful extensions: 217
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of query: 323
length of database: 4,897,600
effective HSP length: 90
effective length of query: 233
effective length of database: 2,336,200
effective search space: 544334600
effective search space used: 544334600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC135505.16