BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135505.15 - phase: 0 /pseudo
(403 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP064494 147 4e-36
BF177486 145 1e-35
CB828006 112 8e-26
TC20220 91 3e-19
TC19087 weakly similar to UP|Q9SXF7 (Q9SXF7) Amino acid transpor... 66 9e-12
BP032689 66 1e-11
AW164093 65 3e-11
BG662238 58 2e-09
TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like... 58 2e-09
AV779312 49 2e-06
TC12794 homologue to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-l... 43 1e-04
BP030795 42 1e-04
AW720246 42 2e-04
BI418749 42 2e-04
TC16422 similar to PIR|T05653|T05653 amino acid transport protei... 41 3e-04
AV418629 40 5e-04
AV766962 40 5e-04
TC14675 homologue to UP|PGMU_PEA (Q9SM60) Phosphoglucomutase, cy... 33 0.065
AU251412 30 0.55
BI419539 30 0.94
>BP064494
Length = 354
Score = 147 bits (370), Expect = 4e-36
Identities = 66/108 (61%), Positives = 82/108 (75%)
Frame = +3
Query: 171 SYSTIAWIASIHRGALPDVQYSSRYSTKAGNIFGIFNALGDIAFGYAGHNVILEIQSTIP 230
SYSTIAW ASI RG PDV Y + + A +F F A+G++AF YAGHNV+LEIQ+T+P
Sbjct: 30 SYSTIAWGASIERGVKPDVDYGYKAHSTADGVFNFFCAMGEVAFSYAGHNVVLEIQATMP 209
Query: 231 STPEKPSKVSMWRGMIIAYLVVALCYFPVTIFGYRAFGNSVDDNILLS 278
STPEKPSK MW+G+++AY+ VA CY PV GY FGNSVDDNIL++
Sbjct: 210 STPEKPSKKPMWKGVVVAYIGVAFCYLPVAFIGYYVFGNSVDDNILIT 353
>BF177486
Length = 333
Score = 145 bits (366), Expect = 1e-35
Identities = 65/106 (61%), Positives = 80/106 (75%), Gaps = 11/106 (10%)
Frame = +1
Query: 307 PVFHMLESFLAEKMNFKPSRFLRFAIRNLYVSITMVLAITFPFFGGLLSFFGGFVFAPTT 366
PVF M+E+ + +K++FKP+R LRF +RNLYV+ TM LAITFPFFGGLL FFGGF FAPTT
Sbjct: 16 PVFDMIETVMVKKLHFKPTRILRFIVRNLYVAFTMFLAITFPFFGGLLGFFGGFAFAPTT 195
Query: 367 YFLPCIMWIFIYKPKLFSLSWCANWV-----------SPIGALRQV 401
YFLPC+MW+ I KP+ +SLSWC NW+ SPIG LR +
Sbjct: 196 YFLPCVMWLAIKKPRKYSLSWCTNWICIVLGLCLMILSPIGGLRTI 333
>CB828006
Length = 567
Score = 112 bits (281), Expect = 8e-26
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 6/189 (3%)
Frame = +2
Query: 69 ESVSGKRFDKYHELSQHAFGERLGLWIVVPQQLMVEVGIDIVYMVIGAKSLKKLHEILCD 128
ESV G R +Y L+ AFG RLG + + + G +++++ G ++LK L LCD
Sbjct: 2 ESVPGTRHSRYLFLAITAFGSRLGKLAALFPVMYLSGGTCVMFIITGGRTLKLLFNTLCD 181
Query: 129 -DCEPIKTT---YFIVLFAFVQYVLSHLPSFNSVAGISLVAAAMSLSYSTIAWIASIHRG 184
DC+ T +F+V F V +++ LP+ +S+ +SLV A +++Y T+ W S+ +G
Sbjct: 182 NDCDAHSLTGVEWFLV-FTCVAILIAQLPNLHSLTAVSLVGAVTAITYCTLFWFLSVKKG 358
Query: 185 ALPDVQYSSRYS--TKAGNIFGIFNALGDIAFGYAGHNVILEIQSTIPSTPEKPSKVSMW 242
V Y+S S + I + NA+G I + GHNV+LEIQ T+PS + SK M
Sbjct: 359 RPHGVSYTSSLSHGSAVDKISDVLNAIGIIVLAFRGHNVLLEIQGTLPSNIVETSKGPMR 538
Query: 243 RGMIIAYLV 251
RG+ I+Y++
Sbjct: 539 RGVSISYIL 565
>TC20220
Length = 514
Score = 91.3 bits (225), Expect = 3e-19
Identities = 56/165 (33%), Positives = 93/165 (55%), Gaps = 7/165 (4%)
Frame = +3
Query: 67 MHESV-SGKRFDKYHELSQHAFGERLGLWIVVPQQLMVEVGIDIVYMVIGAKSLKKLHEI 125
+HESV +G R+ +Y +L +FGERLG + + L + G ++IG + + +++
Sbjct: 6 LHESVENGVRYSRYMQLCFVSFGERLGKLLALFPILYLSAGTCSTIIIIGGSTARTFYQV 185
Query: 126 LCDD---CEPIKTTYFIVLFAFVQYVLSHLPSFNSVAGISLVAA--AMSLSYSTIAWIAS 180
+C D +P+ T + ++F VLS LP+ NS+AG+SL+ A A+ + Y + +
Sbjct: 186 VCGDSCTAKPMTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLIGAITAVGVLYLYLGDLC- 362
Query: 181 IHRGALPDVQYSS-RYSTKAGNIFGIFNALGDIAFGYAGHNVILE 224
HR V Y+ R + A N F + NALG I+F + GHN++LE
Sbjct: 363 *HRVPCQGVNYNPVRPGSSAQNAFNVLNALGIISFAFRGHNLVLE 497
>TC19087 weakly similar to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-like
protein 1, partial (8%)
Length = 388
Score = 66.2 bits (160), Expect = 9e-12
Identities = 39/123 (31%), Positives = 66/123 (52%), Gaps = 8/123 (6%)
Frame = +3
Query: 236 PSKVSMWRGMIIAYLVVALCYFPVTIFGYRAFGNSV--DDNILLSL------EKPRWLII 287
PS V MW+G+ ++Y ++A C FP+ I GY A+G + D +L +L + R+L+
Sbjct: 15 PSHVPMWKGVKVSYTIIAACLFPLAIGGYWAYGQMIPADGGMLAALYAFHSRDVSRFLLG 194
Query: 288 AANIFVVVHVVGSYQVYAVPVFHMLESFLAEKMNFKPSRFLRFAIRNLYVSITMVLAITF 347
++ VVV+ + S+Q+YA+P+F LES + +LR R + +A+
Sbjct: 195 LTSLLVVVNGLCSFQIYAMPLFDDLESQFTTRWKKPCPWWLRSIFRLFSGFMCFYIAVAL 374
Query: 348 PFF 350
P F
Sbjct: 375 PSF 383
>BP032689
Length = 472
Score = 65.9 bits (159), Expect = 1e-11
Identities = 30/67 (44%), Positives = 40/67 (58%), Gaps = 11/67 (16%)
Frame = -1
Query: 348 PFFGGLLSFFGGFVFAPTTYFLPCIMWIFIYKPKLFSLSWCANW-----------VSPIG 396
PFFGGLL FFGG F T+Y LPC++W+ KPK +S W A+ V+PIG
Sbjct: 472 PFFGGLLGFFGGLAFTSTSYILPCVLWLGAKKPKRWSFHWTASLICTIVGILIAIVAPIG 293
Query: 397 ALRQVIL 403
+R +I+
Sbjct: 292 GIRTIIV 272
>AW164093
Length = 344
Score = 64.7 bits (156), Expect = 3e-11
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +3
Query: 204 GIFNALGDIAFGYAGHNVILEIQSTIPSTPEKPSKVSMWRGMIIAYLVVALCYFPVTIFG 263
G+FN + IA YA +I EIQ+T+ P + M++G+ + Y V+A YF ++I G
Sbjct: 15 GVFNDISIIATIYAS-GIIPEIQATLAP----PVEGKMFKGLCLCYSVIAATYFSISISG 179
Query: 264 YRAFGNSVDDNILLS------LEKPRWLIIAANIFVVVHVVGSYQVYAVP 307
Y AFGN IL + L P+W + N+F++V V+ VY P
Sbjct: 180 YWAFGNLAXGTILANFIGETKLLLPKWFFVMTNMFILVQVMALTAVYLQP 329
>BG662238
Length = 354
Score = 58.2 bits (139), Expect = 2e-09
Identities = 35/96 (36%), Positives = 52/96 (53%), Gaps = 8/96 (8%)
Frame = +3
Query: 146 QYVLSHLPSFNSVAGISLVAAAMSLSYSTIAWIASIHR--------GALPDVQYSSRYST 197
Q S +P F+ +S++AA MS +YS I+ I + G+L V + T
Sbjct: 15 QIFFSQIPDFHQTWWLSILAAIMSFTYSLISLYLGITKIAENGTIKGSLTGVSIGT--VT 188
Query: 198 KAGNIFGIFNALGDIAFGYAGHNVILEIQSTIPSTP 233
KA ++G F ALGDIAF Y+ +++EIQ TI + P
Sbjct: 189 KAEKVWGTFQALGDIAFAYSFSQILIEIQDTIKNPP 296
>TC18829 homologue to UP|Q8L4X4 (Q8L4X4) Amino acid permease-like protein,
partial (27%)
Length = 713
Score = 58.2 bits (139), Expect = 2e-09
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Frame = +1
Query: 17 YSAFHNVTAMVGAAVLGFPYAMSQLGWGLGITILVLSWICTLYTAWQMIEM--HESVSGK 74
++ FH TA+VG +L PYA LGW LG L + T Y + M ++ H SG+
Sbjct: 187 HAGFHLTTAIVGPTILTLPYAFRGLGWVLGFVCLTVMGAVTFYAYFLMSKVLEHCEKSGR 366
Query: 75 RFDKYHELSQHAFGERLGLWIVVPQQLMVEVGIDIVYMVIGAKSLKKLHEILC 127
R ++ EL+ G + V+ Q + G+ I +++ + L+ + ++C
Sbjct: 367 RHIRFRELAADVLGSGWMYYFVIFIQTAINTGVGIGAILLAGECLQVSYLLIC 525
>AV779312
Length = 345
Score = 48.5 bits (114), Expect = 2e-06
Identities = 26/64 (40%), Positives = 41/64 (63%), Gaps = 3/64 (4%)
Frame = +3
Query: 21 HNVTAMVGAAVLGFPYAMSQLGWGLGITILVLSWICTLYTAWQMIEMHES---VSGKRFD 77
H +TA++GA VL +AM+QLGW LG++ +++ TLYT+ + + + S V+GKR
Sbjct: 126 HIITAVIGAGVLSLAWAMAQLGWILGVSCILIFAGVTLYTSNLLADCYRSPDPVTGKRNY 305
Query: 78 KYHE 81
Y E
Sbjct: 306 TYME 317
>TC12794 homologue to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-like protein
1, partial (19%)
Length = 679
Score = 42.7 bits (99), Expect = 1e-04
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = +1
Query: 335 LYVSITMVLAITFPFFGGLLSFFGGFVFAPTTYFLPCIMWIFIYKPKLFSLSWCANWV 392
L++ + + + FP L GG P T+ PC MW+ I +P +S +W NW+
Sbjct: 28 LWICLLLHRSWLFPSSQVLAGLLGGLTL-PVTFAYPCFMWVLIKQPTKYSFNWYFNWI 198
>BP030795
Length = 492
Score = 42.4 bits (98), Expect = 1e-04
Identities = 23/84 (27%), Positives = 42/84 (49%)
Frame = -3
Query: 294 VVHVVGSYQVYAVPVFHMLESFLAEKMNFKPSRFLRFAIRNLYVSITMVLAITFPFFGGL 353
+V+ + Y + P+ + L+ L N K + + AI V T+++A+ PFFG L
Sbjct: 463 LVNPISKYVLMTTPITNALKDLLPRGYNSKVTDIIVSAI---LVMSTVIVALAVPFFGYL 293
Query: 354 LSFFGGFVFAPTTYFLPCIMWIFI 377
+S G + + LPC+ ++ I
Sbjct: 292 MSLVGALLSVTASILLPCLCYLKI 221
>AW720246
Length = 445
Score = 42.0 bits (97), Expect = 2e-04
Identities = 29/110 (26%), Positives = 55/110 (49%), Gaps = 3/110 (2%)
Frame = +3
Query: 21 HNVTAMVGAAVLGFPYAMSQLGWGLGITILVLSWICTLYTAWQMIEMH---ESVSGKRFD 77
H +TA+VG+ VL ++++Q+GW G +++ + LYT+ + E + +S GKR
Sbjct: 90 HIITAVVGSGVLSLAWSIAQMGWIAGPGVMIFFSVVALYTSSILAECYRCGDSHFGKRNY 269
Query: 78 KYHELSQHAFGERLGLWIVVPQQLMVEVGIDIVYMVIGAKSLKKLHEILC 127
+ + Q+ G + I Q + G I Y + + SL ++ + C
Sbjct: 270 TFMDAVQNILG-GFSVTICGIVQYLNLFGSAIGYTIAASMSLIEIRKSFC 416
>BI418749
Length = 541
Score = 41.6 bits (96), Expect = 2e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +2
Query: 21 HNVTAMVGAAVLGFPYAMSQLGWGLGITILVLSWICTLYTAWQMIEMHES 70
H VT ++G+ VL P++++QLGW G +++ CTL++A+ + + + S
Sbjct: 323 HIVTGVIGSGVLSLPWSIAQLGWLAGPFSILIIASCTLFSAFLLCDTYRS 472
>TC16422 similar to PIR|T05653|T05653 amino acid transport protein homolog
F22I13.20 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (38%)
Length = 685
Score = 41.2 bits (95), Expect = 3e-04
Identities = 39/166 (23%), Positives = 70/166 (41%), Gaps = 11/166 (6%)
Frame = +2
Query: 17 YSAFHNV-TAMVGAAVLGFPYAMSQLGWGLGI----TILVLSWICTLYTAWQMIEMHESV 71
+ F N+ ++VGA VLG PY + GW G+ T+ L++ C + ++
Sbjct: 191 FKTFANIFISIVGAGVLGLPYCFKRTGWLTGLIMLFTVAFLTYHCMMLLVSTRRKLDSLT 370
Query: 72 SGKRFDKYHELSQHAFGERLGLWIVVPQQLMVEVGIDIVYMVIGAKSLKKLHEILCDDCE 131
+ + +L G LG V ++ + G + Y++ A +L L D
Sbjct: 371 GYSKLGSFGDLGFAICGP-LGRLAVDAMIVLSQAGFCVSYLIFIATTLGFLTSNAAGDTV 547
Query: 132 PI------KTTYFIVLFAFVQYVLSHLPSFNSVAGISLVAAAMSLS 171
P+ K + F F Q L+ +P+ +A +S+ A A L+
Sbjct: 548 PVFLGLTPKVLFLWGWFPF-QLGLNSIPTLTHLAPLSIFADAGDLA 682
>AV418629
Length = 385
Score = 40.4 bits (93), Expect = 5e-04
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +3
Query: 21 HNVTAMVGAAVLGFPYAMSQLGWGLGITILVLSWICTLYTA 61
H +TA++G+ VL +A++QLGW G +++L + T+YT+
Sbjct: 255 HIITAVIGSGVLSLAWAIAQLGWVAGPAVMLLFSLVTVYTS 377
>AV766962
Length = 308
Score = 40.4 bits (93), Expect = 5e-04
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 370 PCIMWIFIYKPKLFSLSWCANW 391
PC MW+ KPK+ SLSWC NW
Sbjct: 307 PCFMWLKAKKPKINSLSWCVNW 242
>TC14675 homologue to UP|PGMU_PEA (Q9SM60) Phosphoglucomutase, cytoplasmic
(Glucose phosphomutase) (PGM) , partial (15%)
Length = 671
Score = 33.5 bits (75), Expect = 0.065
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 320 MNFKPSRFLRFAIRNLYVSITMVLAITFPFFGGLLSFFGG----FVFAPTTYFLPCIMWI 375
+NF L+ A LYV L IT P F SFF G F+F P+ ++P + WI
Sbjct: 421 LNFDVLNNLKNAECGLYV-----LKITVPHFAFFFSFFLGCSFPFIFLPSLCYVPGVSWI 585
Query: 376 FI 377
I
Sbjct: 586 CI 591
>AU251412
Length = 395
Score = 30.4 bits (67), Expect = 0.55
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = -1
Query: 359 GFVFAPTTYFLPCIMWIFIYKPKLFSLS 386
GFV T+ FL C++W+F+ P + S S
Sbjct: 212 GFVSVSTSGFLACLLWLFLSTPVMTSSS 129
>BI419539
Length = 560
Score = 29.6 bits (65), Expect = 0.94
Identities = 28/102 (27%), Positives = 39/102 (37%), Gaps = 26/102 (25%)
Frame = +3
Query: 51 VLSWICTLYTAWQMIEMHESVSGKRFD-----------KYHELS---------------Q 84
VLS + L+ A QM M E +S F K++EL+ Q
Sbjct: 117 VLSELSVLHEALQMTHMSEELSESNFGTSDANGTDDIKKFNELATKLQGMCKSVRVTLDQ 296
Query: 85 HAFGERLGLWIVVPQQLMVEVGIDIVYMVIGAKSLKKLHEIL 126
H F E LW + + VE IV +IG + L +L
Sbjct: 297 HIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSML 422
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.329 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,794,591
Number of Sequences: 28460
Number of extensions: 114940
Number of successful extensions: 857
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of query: 403
length of database: 4,897,600
effective HSP length: 92
effective length of query: 311
effective length of database: 2,279,280
effective search space: 708856080
effective search space used: 708856080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC135505.15