TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135504.3 + phase: 0 
         (166 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        96  8e-28
BP054462                                                               73  2e-14
BP085845                                                               63  2e-11
BP046863                                                               58  7e-10
TC11563                                                                27  1.8
BP072713                                                               27  1.8
AV765111                                                               25  6.9

>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 95.5 bits (236), Expect(2) = 8e-28
 Identities = 46/79 (58%), Positives = 61/79 (76%)
 Frame = +3

Query: 35  RVTPMTGVRRALKSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYV 94
           RV+PM GV R  K  KL+P+FIGP+++ ERVG+V+YR+ LP  LS +H VFHVS L+KY+
Sbjct: 3   RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182

Query: 95  ADPSHVIPREDVQVRDNLT 113
            DPSHVI  EDVQ+  +L+
Sbjct: 183 YDPSHVIRHEDVQLDVHLS 239



 Score = 43.1 bits (100), Expect(2) = 8e-28
 Identities = 18/34 (52%), Positives = 22/34 (63%)
 Frame = +2

Query: 132 KDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
           KD+  VKV+W G +GE  TWE E  MR+ YP  F
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397


>BP054462 
          Length = 422

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 38/93 (40%), Positives = 60/93 (63%), Gaps = 3/93 (3%)
 Frame = +1

Query: 2   IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSR---KLTPKFIGP 58
           +R  +  S    ++Y +K+R+ +++Q GD VFL++ P    RR+L  +   KL+P++ GP
Sbjct: 151 LRANLLKSQDMMRTYANKKRRDVDYQIGDEVFLKLQPYR--RRSLAKKMNEKLSPRYYGP 324

Query: 59  YQISERVGTVAYRVGLPTHLSNLHDVFHVSQLQ 91
           Y I  ++G VAYR+ LP H S +H VFHVS L+
Sbjct: 325 YPIVAKIGAVAYRLELPAH-SRVHPVFHVSLLK 420


>BP085845 
          Length = 464

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 37/106 (34%), Positives = 59/106 (54%)
 Frame = -2

Query: 47  KSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHVIPREDV 106
           K RK   K IGP++I E V  +AY +    +L   H V HV+ L + + D S  I  E V
Sbjct: 421 KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242

Query: 107 QVRDNLTVETSPLRIEDREVKKLRGKDIPLVKVVWGGVTGESLTWE 152
            + ++ +    P+ + D +V+ +R K+I  VKV+W G++G   +WE
Sbjct: 241 XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104


>BP046863 
          Length = 580

 Score = 58.2 bits (139), Expect = 7e-10
 Identities = 32/92 (34%), Positives = 58/92 (62%), Gaps = 1/92 (1%)
 Frame = +1

Query: 2   IREKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRAL-KSRKLTPKFIGPYQ 60
           +R  +  +  + ++  +K R+ +++Q G+ VFL++ P      A  K++KL+P+F GP++
Sbjct: 307 LRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQKLSPRFYGPFK 486

Query: 61  ISERVGTVAYRVGLPTHLSNLHDVFHVSQLQK 92
           + ERV  VAY + L +  S +H VFH+S L+K
Sbjct: 487 VLERVVQVAY*LDLXSE-SRVHPVFHLSLLEK 579


>TC11563 
          Length = 470

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (62%)
 Frame = +2

Query: 134 IPLVKVVWGGVTGESLTWELESKMRDSYPE 163
           +P + + W G    + TWEL S ++DS+P+
Sbjct: 8   VPQLLIQWEGAA--NCTWELLSYIQDSFPQ 91


>BP072713 
          Length = 403

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = +3

Query: 42  VRRALKSRKLTPKFIGPYQISERVGTV 68
           V + LKS K  P+  G Y  SERVG V
Sbjct: 162 VVQTLKSLKWPPRIPGYYDYSERVGVV 242


>AV765111 
          Length = 364

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 18/57 (31%), Positives = 27/57 (46%)
 Frame = +1

Query: 43  RRALKSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSH 99
           RR     K T  F  PYQ+   + T+ +   L +H   L D   ++ L KY+  P+H
Sbjct: 133 RRKTLVIKGTK*FYQPYQLFGCLKTITHCFYLDSHYGTLFDF*TLACLGKYI--PTH 297


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,461,374
Number of Sequences: 28460
Number of extensions: 27903
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of query: 166
length of database: 4,897,600
effective HSP length: 83
effective length of query: 83
effective length of database: 2,535,420
effective search space: 210439860
effective search space used: 210439860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)