TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135504.16 - phase: 0 /pseudo
         (343 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU251673                                                               55  2e-08
BP041664                                                               28  2.9
BP054336                                                               28  2.9
TC16671 similar to PIR|T52104|T52104 GATA-binding transcription ...    27  3.8
TC9283                                                                 27  3.8
TC17166 homologue to UP|Q84L15 (Q84L15) Cytosolic glutamine synt...    27  6.5
TC14616                                                                27  6.5
TC17590 similar to UP|Q94BU7 (Q94BU7) AT3g10970/F9F8_21, partial...    26  8.5

>AU251673 
          Length = 413

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +2

Query: 125 CSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDGAVVTWAVFRREFLNRYFPEDVRGKNEI 184
           CS+ + V   +  L   A DW+  L           TWA F  EF+NR+ P+ VR     
Sbjct: 5   CSDTRAVELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVR 184

Query: 185 EFLELKHGD-MSVTKYAAKFVELAKFYPY 212
           +F  L+  + M+V++Y+A F  L+++ PY
Sbjct: 185 DFERLEQAEGMTVSEYSAHFTHLSRYVPY 271


>BP041664 
          Length = 487

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = -1

Query: 32  ECQL*CCLCCCSELLFLM 49
           E +L*CC CCC+  L L+
Sbjct: 169 ELRL*CCCCCCTGTLVLI 116


>BP054336 
          Length = 473

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 8/15 (53%), Positives = 9/15 (59%)
 Frame = +1

Query: 28  PPRIECQL*CCLCCC 42
           PP   C+  CC CCC
Sbjct: 238 PPNAPCEPCCCCCCC 282


>TC16671 similar to PIR|T52104|T52104 GATA-binding transcription factor
           homolog 2 [imported] -                Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (20%)
          Length = 684

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -1

Query: 26  VEPPRIECQL*CCLCCCSELLFLM 49
           ++PP+IE  L  C CCC  + F +
Sbjct: 201 LDPPKIEL*LISCCCCCRCMSFCL 130


>TC9283 
          Length = 1307

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 116 VERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDG 157
           VER+ R M  +E  ++ +G H L+   ++   +++  L+++G
Sbjct: 905 VERLCRAMGGAEKVEIEYGNHSLSNRVEEAVQAIIDFLKREG 1030


>TC17166 homologue to UP|Q84L15 (Q84L15) Cytosolic glutamine synthetase,
           partial (49%)
          Length = 597

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 106 PDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEA 142
           P GT   L +++ + ++++ S + K+  GTH L EEA
Sbjct: 223 PSGTMMVLAQIKLLEKIVKSSYIHKLFSGTH-LGEEA 330


>TC14616 
          Length = 1353

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
 Frame = -1

Query: 76  QPNAAAGN---DGVRMLETFLRNHPPTFKGRYDPDGTQKW 112
           QP+ A  N   DG        +NHPPT K R        W
Sbjct: 468 QPSTACSNTPQDGPATTRRTEKNHPPTSKSRRSQAAESPW 349


>TC17590 similar to UP|Q94BU7 (Q94BU7) AT3g10970/F9F8_21, partial (21%)
          Length = 445

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = -3

Query: 37 CCLCCCSELLFL 48
          CC CCC +LL L
Sbjct: 38 CCCCCCLQLLLL 3


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.355    0.158    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,103,185
Number of Sequences: 28460
Number of extensions: 79378
Number of successful extensions: 1524
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of query: 343
length of database: 4,897,600
effective HSP length: 91
effective length of query: 252
effective length of database: 2,307,740
effective search space: 581550480
effective search space used: 581550480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 55 (25.8 bits)