TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135504.12 - phase: 0 
         (179 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18437 weakly similar to UP|Q9LVB3 (Q9LVB3) Receptor-like prote...    29  0.54
AV766736                                                               28  0.70
AV407111                                                               27  2.7
BP066070                                                               25  5.9
BP066356                                                               25  5.9
TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)           25  7.8

>TC18437 weakly similar to UP|Q9LVB3 (Q9LVB3) Receptor-like protein kinase,
           partial (9%)
          Length = 503

 Score = 28.9 bits (63), Expect = 0.54
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +3

Query: 97  WWGIDLLGPFPKATGQLKYLVVAINYSTKW 126
           W    L+GP P   G LK+L +   ++ KW
Sbjct: 249 WSSNSLIGPLPSELGNLKHLSLLYLHANKW 338


>AV766736 
          Length = 601

 Score = 28.5 bits (62), Expect = 0.70
 Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 7/51 (13%)
 Frame = +3

Query: 50 RAGYYWPTMLKDAEDYVNLCDKCQRHGDMHLAPP-------VELTSLVSPW 93
          +A Y W T+ +D E   N+    +R   ++  PP       +EL  L SPW
Sbjct: 3  KASYSWHTVSRDCEQ*ANVSRPRRRRQLLNRPPPPSKETNAMELQPLFSPW 155


>AV407111 
          Length = 371

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = +3

Query: 113 LKYLVVAINYSTKWIEVEPLAKIKAKNVLRFFKRNILARFGVPALVISVLSR-----FWG 167
           L  LV+  N     +E++PLA +     L     NI  +      VIS L       F  
Sbjct: 129 LHTLVLTNNRIVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVISKLDSLRVLDFKK 308

Query: 168 IKSLIRLEPFNL 179
           +K+  RLE  NL
Sbjct: 309 VKNKERLEAKNL 344


>BP066070 
          Length = 488

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 15/52 (28%), Positives = 24/52 (45%)
 Frame = -1

Query: 72  CQRHGDMHLAPPVELTSLVSPWPFAWWGIDLLGPFPKATGQLKYLVVAINYS 123
           C+R   ++  PPV L  L S     W G   +  +  +   L+Y+   IN+S
Sbjct: 209 CKRSLPIYSEPPVCLVCLKSAPELLW*GPRHVYLYSNSLSSLRYIPRGINFS 54


>BP066356 
          Length = 428

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 23/80 (28%), Positives = 34/80 (41%), Gaps = 8/80 (10%)
 Frame = +1

Query: 17  CLGPNETQEVLADVHDGI------CGQHLDVKSLARKVLRAGYYWPTM--LKDAEDYVNL 68
           CLG  E +  ++D HD           H D KS A + +   +YW  +  LK     ++L
Sbjct: 85  CLGNGEKKLYISDYHDAYLPFLNGINAHEDRKSYAXRTI---FYWTRVGTLKPIAIELSL 255

Query: 69  CDKCQRHGDMHLAPPVELTS 88
               Q      L PP++ TS
Sbjct: 256 SQSKQ-----VLTPPMDATS 300


>TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)
          Length = 2554

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 42   KSLARKVLRAGYYWPTMLKDAEDYVNLCDK-----CQRHG 76
            K++  +VLR   Y+P  LKDA   + +C       C++HG
Sbjct: 1467 KTITLEVLRQ--YFPGSLKDAAKNIGVCTTTLKRVCRQHG 1580


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.143    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,475,764
Number of Sequences: 28460
Number of extensions: 48620
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of query: 179
length of database: 4,897,600
effective HSP length: 84
effective length of query: 95
effective length of database: 2,506,960
effective search space: 238161200
effective search space used: 238161200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)