BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135465.3 + phase: 0 /pseudo
(169 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14160 homologue to GB|BAB90396.1|20161472|AP003570 ADP-ribosyl... 303 1e-83
TC14161 UP|AAR29293 (AAR29293) ADP-ribosylation factor, complete 303 4e-83
TC10350 homologue to UP|AAR29293 (AAR29293) ADP-ribosylation fac... 302 4e-83
TC9178 homologue to GB|AAB17725.1|1654142|BCU38470 small GTP-bin... 204 8e-54
BG662309 155 3e-39
BP047805 109 4e-26
BP034816 106 2e-24
CB826970 104 7e-24
TC15063 homologue to UP|SARA_ARATH (O04834) GTP-binding protein ... 92 5e-20
TC17859 homologue to UP|Q8VY57 (Q8VY57) ADP-ribosylation factor-... 92 5e-20
TC12986 homologue to UP|SARB_ARATH (Q01474) GTP-binding protein ... 90 2e-19
BI420469 77 2e-15
TC13878 weakly similar to GB|BAA19225.1|1842150|AB001051 ADP-rib... 64 1e-11
TC16955 UP|Q40206 (Q40206) RAB1X, complete 57 2e-09
TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete 57 2e-09
TC8253 UP|Q40219 (Q40219) RAB8E, complete 56 4e-09
NP459466 RAB8C [Lotus japonicus] 55 5e-09
AV417711 54 2e-08
TC12907 UP|Q40201 (Q40201) RAB1A, complete 54 2e-08
BP071405 53 2e-08
>TC14160 homologue to GB|BAB90396.1|20161472|AP003570 ADP-ribosylation
factor {Oryza sativa (japonica cultivar-group);},
partial (48%)
Length = 1105
Score = 303 bits (775), Expect = 1e-83
Identities = 151/152 (99%), Positives = 152/152 (99%)
Frame = +3
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 207 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 386
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 387 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 566
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH
Sbjct: 567 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 662
>TC14161 UP|AAR29293 (AAR29293) ADP-ribosylation factor, complete
Length = 912
Score = 303 bits (775), Expect(2) = 4e-83
Identities = 151/152 (99%), Positives = 152/152 (99%)
Frame = +2
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 89 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 268
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 269 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 448
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH
Sbjct: 449 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 544
Score = 20.8 bits (42), Expect(2) = 4e-83
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = +1
Query: 161 VYPEHMC 167
VYPEH+C
Sbjct: 547 VYPEHLC 567
>TC10350 homologue to UP|AAR29293 (AAR29293) ADP-ribosylation factor,
partial (98%)
Length = 603
Score = 302 bits (774), Expect(2) = 4e-83
Identities = 151/152 (99%), Positives = 151/152 (99%)
Frame = +3
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 72 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 251
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR VEARDELHRMLNEDELRDAV
Sbjct: 252 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRAVEARDELHRMLNEDELRDAV 431
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH
Sbjct: 432 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 527
Score = 21.2 bits (43), Expect(2) = 4e-83
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 161 VYPEHMCYL 169
VY EHMC+L
Sbjct: 530 VYSEHMCHL 556
>TC9178 homologue to GB|AAB17725.1|1654142|BCU38470 small GTP-binding
protein ARF {Brassica rapa subsp. pekinensis;} ,
complete
Length = 1033
Score = 204 bits (518), Expect = 8e-54
Identities = 95/151 (62%), Positives = 123/151 (80%)
Frame = +3
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL FT+LFS +F KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 261 MGLVFTRLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 440
Query: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
I F VWD+GGQ IRP WR YF NTQ +I+VVDS+D DR+V A++E H +L E+EL+ AV
Sbjct: 441 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAV 620
Query: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151
+L+FANKQDLP A++ A +T+ L LH ++ R
Sbjct: 621 VLIFANKQDLPGALDDAAVTEALELHKIKNR 713
>BG662309
Length = 347
Score = 155 bits (392), Expect = 3e-39
Identities = 76/78 (97%), Positives = 78/78 (99%)
Frame = +2
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 113 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYQN 292
Query: 61 ISFTVWDVGGQDKIRPLW 78
ISFTVWDVGGQDKIRPLW
Sbjct: 293 ISFTVWDVGGQDKIRPLW 346
>BP047805
Length = 477
Score = 109 bits (273), Expect(2) = 4e-26
Identities = 54/55 (98%), Positives = 54/55 (98%)
Frame = -2
Query: 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152
DR VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH
Sbjct: 476 DRAVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 312
Score = 23.1 bits (48), Expect(2) = 4e-26
Identities = 7/9 (77%), Positives = 9/9 (99%)
Frame = -1
Query: 161 VYPEHMCYL 169
VYPEHMC++
Sbjct: 309 VYPEHMCHV 283
>BP034816
Length = 539
Score = 106 bits (264), Expect = 2e-24
Identities = 52/55 (94%), Positives = 55/55 (99%)
Frame = -2
Query: 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 152
DRVVEARDELHRMLNEDELRDAVLLVFAN+QDLP+AMNAAEITD+LGLHSLRQRH
Sbjct: 538 DRVVEARDELHRMLNEDELRDAVLLVFANQQDLPHAMNAAEITDQLGLHSLRQRH 374
>CB826970
Length = 576
Score = 104 bits (260), Expect = 7e-24
Identities = 54/124 (43%), Positives = 78/124 (62%)
Frame = +2
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+KEMRILMVGLD +GKTTI+ K+ + PT+GFN+ T+ Y+ IS +
Sbjct: 236 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNINTISYQTIS-----------L 382
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R WR+YF+ T GL++VVDS+D R+ + + EL +L E+ L + LL+ ANKQD+ A+
Sbjct: 383 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGSSLLILANKQDIRGAL 562
Query: 135 NAAE 138
E
Sbjct: 563 TPDE 574
>TC15063 homologue to UP|SARA_ARATH (O04834) GTP-binding protein SAR1A,
complete
Length = 933
Score = 92.0 bits (227), Expect = 5e-20
Identities = 46/131 (35%), Positives = 76/131 (57%)
Frame = +2
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 218 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIA 397
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W+ Y+ ++++VD+ D++R E++ EL +L+++ L + L+ NK D+P A
Sbjct: 398 RRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAA 577
Query: 135 NAAEITDKLGL 145
+ E+ LGL
Sbjct: 578 SEEELRYSLGL 610
>TC17859 homologue to UP|Q8VY57 (Q8VY57) ADP-ribosylation factor-like
protein, partial (71%)
Length = 445
Score = 92.0 bits (227), Expect = 5e-20
Identities = 48/130 (36%), Positives = 75/130 (56%), Gaps = 3/130 (2%)
Frame = +3
Query: 1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE 57
MGL +F LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 54 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 233
Query: 58 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 117
N++ +WD+GGQ + R +W Y + +++VVD+ D D + +R ELH +L++ L
Sbjct: 234 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLS 413
Query: 118 DAVLLVFANK 127
LLV NK
Sbjct: 414 GIPLLVLGNK 443
>TC12986 homologue to UP|SARB_ARATH (Q01474) GTP-binding protein SAR1B,
partial (80%)
Length = 515
Score = 90.1 bits (222), Expect = 2e-19
Identities = 47/131 (35%), Positives = 74/131 (55%)
Frame = +1
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 103 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVA 282
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134
R +W+ Y+ + ++VD+ D++R E++ EL +L+++ L LV NK D+P A
Sbjct: 283 RRVWKDYYAKVDAVAYLVDAYDKERFAESKKELDALLSDEALASVPFLVLGNKIDIPYAS 462
Query: 135 NAAEITDKLGL 145
+ E+ LGL
Sbjct: 463 SEDELRYHLGL 495
>BI420469
Length = 239
Score = 76.6 bits (187), Expect = 2e-15
Identities = 40/51 (78%), Positives = 42/51 (81%)
Frame = +3
Query: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF 51
MGL+FT RLFAKKEMRILM LDAAGKTTILY+ LGEIV TIPTIGF
Sbjct: 87 MGLTFTFFVXRLFAKKEMRILMFVLDAAGKTTILYRRGLGEIVPTIPTIGF 239
>TC13878 weakly similar to GB|BAA19225.1|1842150|AB001051 ADP-ribosylation
factor {Dugesia japonica;} , partial (37%)
Length = 479
Score = 64.3 bits (155), Expect = 1e-11
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +1
Query: 97 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHCLHV 156
R R+ +DEL R+L DEL+ +V+LVFANKQD+ +AM AEITD L LHS++ H H+
Sbjct: 1 RARISIMKDELFRLLGHDELKQSVILVFANKQDIKDAMTPAEITDALSLHSIKD-HDWHI 177
>TC16955 UP|Q40206 (Q40206) RAB1X, complete
Length = 1104
Score = 56.6 bits (135), Expect = 2e-09
Identities = 38/141 (26%), Positives = 65/141 (45%), Gaps = 5/141 (3%)
Frame = +2
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
+IL++G GK+++L + PTIG + + TV K + T+WD GQ++
Sbjct: 131 KILLIGDSGVGKSSLLVSFISSSVEDQSPTIGVDFKIKMLTVGGKRLKLTLWDTAGQERF 310
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNA 133
R L Y++ QG+I V D R+ + + L +D V ++ NK D
Sbjct: 311 RTLTSSYYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSNNQDCVKMLVGNKVDRD-- 484
Query: 134 MNAAEITDKLGLHSLRQRHCL 154
A ++ + GL ++ CL
Sbjct: 485 -AARAVSREEGLALAKELGCL 544
>TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete
Length = 1019
Score = 56.6 bits (135), Expect = 2e-09
Identities = 38/143 (26%), Positives = 66/143 (45%), Gaps = 5/143 (3%)
Frame = +2
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74
++LM+G GK+++L E PTIG F V+ V K + +WD GQ++
Sbjct: 116 KLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLKLAIWDTAGQERF 295
Query: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNA 133
R L Y++ QG+I V D RD + + ++ +D + ++ NK D
Sbjct: 296 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVD---K 466
Query: 134 MNAAEITDKLGLHSLRQRHCLHV 156
+ ++ K G+ R+ CL +
Sbjct: 467 ESDRVVSKKEGIDFAREYGCLFI 535
>TC8253 UP|Q40219 (Q40219) RAB8E, complete
Length = 1106
Score = 55.8 bits (133), Expect = 4e-09
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +3
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++L++G GK+ +L + G T+ I TIG F + T+E K I +WD GQ+
Sbjct: 228 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 407
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLP 131
+ R + Y++ G++ V D D ++ +H + E D V ++ NK D+
Sbjct: 408 RFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNI--EQHASDNVNKILVGNKADMD 581
Query: 132 NAMNA 136
+ A
Sbjct: 582 ESKRA 596
>NP459466 RAB8C [Lotus japonicus]
Length = 639
Score = 55.5 bits (132), Expect = 5e-09
Identities = 32/124 (25%), Positives = 62/124 (49%), Gaps = 5/124 (4%)
Frame = +1
Query: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
+++L++G GK+ +L + G T+ I TIG F + T+E K I +WD GQ+
Sbjct: 46 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 225
Query: 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132
++R + Y++ +G++ V D D R+ + R + + + ++ NK D+
Sbjct: 226 RVRTITTAYYRGAKGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 402
Query: 133 AMNA 136
+ A
Sbjct: 403 SKRA 414
>AV417711
Length = 292
Score = 53.5 bits (127), Expect = 2e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 59
+KEMRILMVGLD +GKTTI+ K+ + PT+GFN++T+ Y+
Sbjct: 153 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTISYQ 287
>TC12907 UP|Q40201 (Q40201) RAB1A, complete
Length = 869
Score = 53.5 bits (127), Expect = 2e-08
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Frame = +2
Query: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
++L++G + GK+ +L + V + I TIG F + TVE K I +WD GQ++
Sbjct: 140 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTAGQER 319
Query: 74 IRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
R + Y++ G+I V D + + V + +E+ R N+ + L+ NK DL
Sbjct: 320 FRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCK----LLVGNKSDL 487
Query: 131 -----PNAMNAAEITDKLGL 145
+ A D+LG+
Sbjct: 488 VENKVVDTQTAKAFADELGI 547
>BP071405
Length = 490
Score = 53.1 bits (126), Expect = 2e-08
Identities = 22/69 (31%), Positives = 41/69 (58%)
Frame = -2
Query: 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136
+W+ Y+ ++++VD+ D++R E++ EL +L+++ L LV NK D+P A +
Sbjct: 489 VWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLVLGNKIDIPYAASE 310
Query: 137 AEITDKLGL 145
E+ LGL
Sbjct: 309 EELRYHLGL 283
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.141 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,518,987
Number of Sequences: 28460
Number of extensions: 27037
Number of successful extensions: 259
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of query: 169
length of database: 4,897,600
effective HSP length: 84
effective length of query: 85
effective length of database: 2,506,960
effective search space: 213091600
effective search space used: 213091600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC135465.3