TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135465.2 + phase: 0 
         (194 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19511 similar to UP|Q9ARI4 (Q9ARI4) PII protein, partial (66%)      272  2e-74
BI418878                                                               30  0.36
AV410291                                                               28  1.0
BP080173                                                               27  3.0
BP048622                                                               27  3.0
TC18364 similar to GB|AAP21240.1|30102644|BT006432 At1g30540 {Ar...    26  3.9
AV780786                                                               26  5.2
BP033980                                                               26  5.2
TC9529 similar to UP|O48794 (O48794) F24O1.3, partial (9%)             26  5.2
AW719523                                                               25  8.8
TC18350 similar to UP|O81911 (O81911) T7I23.17 protein, partial ...    25  8.8

>TC19511 similar to UP|Q9ARI4 (Q9ARI4) PII protein, partial (66%)
          Length = 631

 Score =  272 bits (696), Expect = 2e-74
 Identities = 140/190 (73%), Positives = 158/190 (82%), Gaps = 1/190 (0%)
 Frame = +1

Query: 5   AKPNVFNGLNFHINETQFPFSSFSVIRKRFGDSSHRNVVLKSNGNASILPKIRAQN-LPD 63
           A+ ++F  +NF +NE    F+  S I    G+ S RNV L+  GNA I+P+IRAQ+   +
Sbjct: 1   ARTHMFGVVNFQLNEAPMAFAGSSAILWHHGERSQRNVALRRRGNAMIVPRIRAQSSASE 180

Query: 64  YVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSED 123
           YVP+SKFYKVEAILRPWR+P VSS LL MGIRGVTVSDV+GFGAQGGSKERQGGSEFSED
Sbjct: 181 YVPDSKFYKVEAILRPWRVPLVSSALLNMGIRGVTVSDVRGFGAQGGSKERQGGSEFSED 360

Query: 124 NFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAER 183
           NFVAKVKMEIVVR DQVEAVI+KI+E ARTGEIGDGKIFLIPVSDVIR+RTGERGEQAER
Sbjct: 361 NFVAKVKMEIVVRNDQVEAVIDKIIEEARTGEIGDGKIFLIPVSDVIRVRTGERGEQAER 540

Query: 184 MAGGLTDALS 193
           M GG TD LS
Sbjct: 541 MTGGRTDILS 570


>BI418878 
          Length = 609

 Score = 29.6 bits (65), Expect = 0.36
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 32  KRFGDSSHRNVVLKSNGNASILPKIRAQNLPDYVPESKFYKVEAILRPW 80
           KR+G   HR++    +    ++ +   Q+   YV   KFY  +A +  W
Sbjct: 443 KRYGRKKHRSIPKPKSAEPDLINQSGHQHAIAYVQGDKFYGAKATINVW 589


>AV410291 
          Length = 362

 Score = 28.1 bits (61), Expect = 1.0
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = +3

Query: 13  LNFHINETQFPFSSFSVIRKRFGDSSHRNVVLKSN 47
           L+F +++  FPF SFS+  ++F   SH +++L+++
Sbjct: 123 LSFTLHQILFPFLSFSICARKF---SHLHILLQTS 218


>BP080173 
          Length = 382

 Score = 26.6 bits (57), Expect = 3.0
 Identities = 11/17 (64%), Positives = 14/17 (81%)
 Frame = +2

Query: 75  AILRPWRIPQVSSGLLK 91
           AIL PW+IPQ S+ L+K
Sbjct: 152 AILAPWKIPQSSA*LIK 202


>BP048622 
          Length = 497

 Score = 26.6 bits (57), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = -2

Query: 78  RPWRIPQVSSGLLKMGIRG 96
           RPW+ P +SS  LK  +RG
Sbjct: 439 RPWKAPWMSSDALKKSLRG 383


>TC18364 similar to GB|AAP21240.1|30102644|BT006432 At1g30540 {Arabidopsis
           thaliana;}, partial (5%)
          Length = 408

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 137 KDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAERMAGGLTDALSV 194
           +++ + +I+  M+  R GEI D +  ++PVSD      GE G     + GG T  + +
Sbjct: 208 QEKEQLLIDAEMKRYRNGEIWDFEDDIMPVSD------GETGGVLLGLDGGTTSTVCI 363


>AV780786 
          Length = 549

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 30  IRKRFGDSSHRNVVLKSNGNAS-ILPKIRAQNLPDYVPESKFYKVEAI 76
           +R+R     H +++    GNA+     IRA  LP YVP+ + + ++ +
Sbjct: 341 LRERVSRVQHLSIIRHRVGNANNTYSGIRAVKLPLYVPQRRRFLLKGL 484


>BP033980 
          Length = 615

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
 Frame = +2

Query: 12  GLNFHINETQFPFSS-----FSVIRK----------RFGDSSHRNVVLKSNGNASILPKI 56
           G + H+    FPF +      S++RK           F  +S  N  + S+     L  I
Sbjct: 329 GADKHVAVLAFPFGTHAPPLLSLVRKIAAEAPEATFSFFSTSRSNASVFSSLKEEELHNI 508

Query: 57  RAQNLPDYVPE 67
           +A N+PD +PE
Sbjct: 509 KAYNVPDGLPE 541


>TC9529 similar to UP|O48794 (O48794) F24O1.3, partial (9%)
          Length = 614

 Score = 25.8 bits (55), Expect = 5.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 8   NVFNGLNFHINETQFPFSSFSVIRK 32
           ++ +G+N+H+   +F FSSF V+ K
Sbjct: 291 SLIHGINYHLLYLKFIFSSFVVLGK 217


>AW719523 
          Length = 543

 Score = 25.0 bits (53), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 144 INKIMETARTGEIGDGKIFLIPVSD 168
           I+++  TAR G+ G   +FL+P  D
Sbjct: 32  IHRVGRTARLGKQGHAVVFLLPKED 106


>TC18350 similar to UP|O81911 (O81911) T7I23.17 protein, partial (44%)
          Length = 628

 Score = 25.0 bits (53), Expect = 8.8
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -3

Query: 35  GDSSHRNVVLKSNGNASILPKIRAQNLPDYVPESKFYK--------VEAILRPWRIPQVS 86
           G SS  +++++ +GN ++L +    +L   +     ++        + A LRPW++    
Sbjct: 443 GSSSSVSMMMEGSGNLTLLMRRYFMHLASLMHPLSSWREYLYEMPTITAFLRPWKLGGGP 264

Query: 87  SGLLKMG 93
            G  K+G
Sbjct: 263 VGAWKLG 243


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,433,497
Number of Sequences: 28460
Number of extensions: 26301
Number of successful extensions: 177
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of query: 194
length of database: 4,897,600
effective HSP length: 85
effective length of query: 109
effective length of database: 2,478,500
effective search space: 270156500
effective search space used: 270156500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)