BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135464.8 - phase: 0
(559 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18363 UP|Q56662 (Q56662) TcpI protein (Fragment), partial (9%) 34 0.071
TC19311 33 0.12
TC9469 similar to UP|Q42949 (Q42949) Catechol O-methyltransferas... 31 0.60
TC12309 29 2.3
AV768875 29 2.3
TC19931 weakly similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransf... 28 3.0
BP082045 28 3.0
TC11361 28 3.9
TC12275 similar to GB|CAB45977.1|5281041|ATT4C9 flavonoid 3'''',... 28 3.9
AV776470 28 5.1
TC10259 similar to UP|O80853 (O80853) At2g30880 protein, partial... 28 5.1
TC18421 similar to UP|Q9ZV23 (Q9ZV23) At2g28910 protein (At2g289... 28 5.1
TC15728 similar to AAS09986 (AAS09986) MYB transcription factor,... 27 8.7
>TC18363 UP|Q56662 (Q56662) TcpI protein (Fragment), partial (9%)
Length = 594
Score = 33.9 bits (76), Expect = 0.071
Identities = 22/63 (34%), Positives = 31/63 (48%)
Frame = +1
Query: 225 SADAQHSDSANVSAAIHHSDDEDNLSAAAHHSDDVSPQNVTKDPLDFEFIPVMPDDINKA 284
S D+ DS + + I S D+ S ++ + + Q VTK DFEF + PD N A
Sbjct: 55 SEDSISCDSLSFAGLI--SQDQQQKSPSSTNQNKHHYQQVTKQDPDFEFSTIKPDFNNSA 228
Query: 285 TLP 287
T P
Sbjct: 229 TSP 237
>TC19311
Length = 550
Score = 33.1 bits (74), Expect = 0.12
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 467 VYIAAVYASTYYLKRRQLWADLTHIQEHFVGPWLFVGDFNAVL 509
+++A Y TY + LW DL + E+ + PW+ +FN +L
Sbjct: 369 LHLATDYGITYPQLHQLLWHDLQWMHEYIIWPWIPGCNFNTIL 241
>TC9469 similar to UP|Q42949 (Q42949) Catechol O-methyltransferase ,
partial (26%)
Length = 642
Score = 30.8 bits (68), Expect = 0.60
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 215 KLPVQTDLTESADAQHSDSANVSAAIHHSDDEDNLSAAAH 254
+LP Q + QHS S+ S+++HHS+ E + S H
Sbjct: 135 ELPQQQSPFHHQEQQHSSSSKASSSVHHSNHEVSTSKRWH 16
>TC12309
Length = 559
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (44%)
Frame = -1
Query: 143 NIGHHNSSCRWLHPVKEPLIDKKKKTIISQKPQPPKWLPRDN 184
N HH SC P I +KKK+++ P PP W N
Sbjct: 139 NAHHHGCSC*G------PCISQKKKSLLFIHPWPPVWASLSN 32
>AV768875
Length = 232
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 480 KRRQLWADLTHIQEHFVGPWLFVGDFNAVL 509
+R LW L+ I+ PWL +GD N +L
Sbjct: 1 QRDILWQHLSTIRASISIPWLLIGDMNEIL 90
>TC19931 weakly similar to UP|Q8L5A7 (Q8L5A7) Steroid sulfotransferase-like
protein (At5g07010), partial (29%)
Length = 539
Score = 28.5 bits (62), Expect = 3.0
Identities = 19/62 (30%), Positives = 25/62 (39%), Gaps = 2/62 (3%)
Frame = +2
Query: 121 TGFSFSIEITYERLPAFCTHCGNIGHHNSSCRWLHPVKEPLID--KKKKTIISQKPQPPK 178
T FS I +R +C+H I HH +L K P +K T Q P P
Sbjct: 314 TYIHFSKAIPSQR**CYCSHLSKIRHHLVESSYLRSGKPPQFSFLRKSSTTHFQSPSPCA 493
Query: 179 WL 180
+L
Sbjct: 494 FL 499
>BP082045
Length = 348
Score = 28.5 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 21/30 (69%)
Frame = -3
Query: 158 KEPLIDKKKKTIISQKPQPPKWLPRDNLDG 187
+EPL+ KKKK + S+KP+ + ++ ++G
Sbjct: 301 EEPLVFKKKKKLASEKPRQRESFDQEEING 212
>TC11361
Length = 549
Score = 28.1 bits (61), Expect = 3.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 138 CTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIIS 171
CTHCG +GH C L + P KK K++ S
Sbjct: 42 CTHCGILGHTKDKCYRL--IGFPPHYKKSKSVAS 137
>TC12275 similar to GB|CAB45977.1|5281041|ATT4C9 flavonoid 3'''',
5''''-hydroxylase-like protein {Arabidopsis thaliana;},
partial (19%)
Length = 450
Score = 28.1 bits (61), Expect = 3.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 241 HHSDDEDNLSAAAHHSDDVS--PQNVTKDPLDFEFIPVMPDDINKATLP 287
HH D NLS +HH ++ PQ + DP P P + K +LP
Sbjct: 71 HHKPDHSNLSHFSHHLVHMALLPQTQSPDPTT-ATRPTGPPHLRKPSLP 214
>AV776470
Length = 338
Score = 27.7 bits (60), Expect = 5.1
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = -3
Query: 140 HCGNIGHHNSSCRWLHPVKEPL 161
H GN+ ++ RW+HP ++PL
Sbjct: 207 HNGNVPLGDTPLRWMHPCRDPL 142
>TC10259 similar to UP|O80853 (O80853) At2g30880 protein, partial (11%)
Length = 567
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Frame = +1
Query: 270 DFEFIPVMPDDINKATL------PSTSIHVLEETADTAEV-PIEDTT----AAAEPLFTD 318
D + + ++++KA L P+ + +V+ D + P+ D A E D
Sbjct: 31 DTKHVDPTEENVDKACLSVSRAIPAPAENVVHMATDQVNIQPVGDNEWSDIQATEARIAD 210
Query: 319 VMALEAQTQTNRTDVELIAARVASLQHHE 347
V + A+T N TD+ +I+ + QH +
Sbjct: 211 VREVAAETDGNSTDIPVISQPGTNHQHEQ 297
>TC18421 similar to UP|Q9ZV23 (Q9ZV23) At2g28910 protein
(At2g28910/F8N16.20), partial (28%)
Length = 553
Score = 27.7 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 138 CTHCGNIGHHNSSCRWLHPVKEPLIDKKKKTIISQKPQ 175
C CG +GH C+ L VK+ DK++K + P+
Sbjct: 431 CKKCGRVGHLKFQCKNLVKVKD---DKEEKDFEAMHPR 535
>TC15728 similar to AAS09986 (AAS09986) MYB transcription factor, partial
(34%)
Length = 1207
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 104 VDMDLSKH-IFNEVMIERTGFSFSIEITYERLPAFCTHCGNIGHHNSSC 151
VD SKH +F +M+ RT C+ CGN GH++ +C
Sbjct: 142 VDHQASKH*LF*AMMMSRT----------------CSQCGNNGHNSRTC 240
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,024,403
Number of Sequences: 28460
Number of extensions: 168162
Number of successful extensions: 894
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of query: 559
length of database: 4,897,600
effective HSP length: 95
effective length of query: 464
effective length of database: 2,193,900
effective search space: 1017969600
effective search space used: 1017969600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC135464.8