BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135461.15 + phase: 0 /pseudo
(1184 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 117 1e-26
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 103 2e-22
AV421390 91 1e-18
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J... 89 5e-18
TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP... 88 7e-18
BP066038 83 2e-16
TC16655 homologue to UP|O99018 (O99018) Chloroplast protease pre... 83 3e-16
CB826675 80 1e-15
CN825587 77 2e-14
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat... 77 2e-14
TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%) 75 8e-14
TC12379 homologue to UP|O04327 (O04327) Cell division protein Ft... 73 3e-13
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa... 72 7e-13
AV408284 69 6e-12
BF177891 62 4e-10
TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 ... 57 1e-08
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T... 56 3e-08
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas... 45 7e-05
AV422700 40 0.003
AV408157 40 0.003
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 117 bits (293), Expect = 1e-26
Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 2/240 (0%)
Frame = +3
Query: 659 VDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVAF-LQNPRAFQEMGARAPRGVL 717
VDP+ MK K P + +D +EI EV+ +++P F+ +G P+GVL
Sbjct: 273 VDPLVNL---MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVL 443
Query: 718 IVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVIL 777
+ G GTGKT LA A+A + + +L ++G+ + VRELF AR+ AP I+
Sbjct: 444 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL-VQKYIGEGSRMVRELFVMAREHAPSII 620
Query: 778 FVEDFDLFAGVRGKF-IHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDEAL 836
F+++ D R + + + + + +LL +LDGFE + + ++ T + +D+AL
Sbjct: 621 FMDEIDSIGSARMESGSGXGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL 800
Query: 837 QRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEYVDWKKVAEKTALLRPIELKLV 896
RPGR+DR P + R++IL ++ L+ +D KK+AEK ELK V
Sbjct: 801 LRPGRIDRKIEFPNPNEESRQDILKIHSRRM---NLMRGIDLKKIAEKMNGASGAELKAV 971
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 103 bits (257), Expect = 2e-22
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 1/202 (0%)
Frame = +1
Query: 656 REGVDPIKTAFEHMKRVKKPPIPLNNFSSIDSMKEEISEVVAF-LQNPRAFQEMGARAPR 714
++ VDP+ + MK K P + +D+ +EI E V L +P ++++G + P+
Sbjct: 319 QDEVDPMVSV---MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPK 489
Query: 715 GVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAP 774
GV++ GE GTGKT LA A+A + + +L ++G VRELF+ A DL+P
Sbjct: 490 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL-IQKYLGDGPKLVRELFRVADDLSP 666
Query: 775 VILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLKQIDE 834
I+F+++ D R ++ + + +LL +LDGF+ + V ++ T ++ +D
Sbjct: 667 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP 846
Query: 835 ALQRPGRMDRIFHLQRPTQAER 856
AL RPGR+DR P R
Sbjct: 847 ALLRPGRIDRKIEFPLPDTKTR 912
>AV421390
Length = 409
Score = 90.5 bits (223), Expect = 1e-18
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Frame = +2
Query: 670 KRVKKPPIPLNNFSSI------DSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERG 723
K + K +P N + D K+E+ EVV +L+NP F +G + P+G+L+ G G
Sbjct: 23 KELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLRNPAKFTRLGGKLPKGILLTGAPG 202
Query: 724 TGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFD 783
TGKT LA AIA EA VP + E M+VG A VR LFQ A+ AP I+F+++ D
Sbjct: 203 TGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGVGARRVRSLFQAAKKKAPCIIFIDEID 379
Query: 784 LFAGVR 789
R
Sbjct: 380 AVGSTR 397
>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 771
Score = 88.6 bits (218), Expect = 5e-18
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 13/207 (6%)
Frame = +3
Query: 667 EHMKRVKKPPIPLN-------NFSSIDSMKEEISEVVAF-LQNPRAFQEMGARAPRGVLI 718
E KR++ IP N + ++D +KE + E+V L+ P F+ + RG+L+
Sbjct: 141 EFEKRIRPEVIPANEIGVTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILL 320
Query: 719 VGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILF 778
G GTGKT LA AIA EA + + + + W G+ NVR LF A +AP I+F
Sbjct: 321 FGPPGTGKTMLAXAIANEAGASFINVSMSTITS-KWFGEDEKNVRALFSLAAKVAPTIIF 497
Query: 779 VEDFDLFAGVRGKFIHTENQDHEA---FINQLLVELDGFEKQDG--VVLMATTRNLKQID 833
V++ D G R T +HEA N+ + DG G ++++A T +D
Sbjct: 498 VDEVDSMLGQR-----TRVGEHEAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFDLD 662
Query: 834 EALQRPGRMDRIFHLQRPTQAERENIL 860
EA+ R R +R + P+ RE IL
Sbjct: 663 EAIIR--RFERRIMVGLPSVENREMIL 737
>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
partial (74%)
Length = 1060
Score = 88.2 bits (217), Expect = 7e-18
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Frame = +1
Query: 673 KKPPIPLNNFSSIDSMKEEISEVVAF-LQNPRAFQEMGARAP-RGVLIVGERGTGKTSLA 730
+KP I N+ + ++S K+ + E V ++ P+ F G R P R L+ G GTGK+ LA
Sbjct: 442 EKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKSYLA 615
Query: 731 MAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRG 790
A+A EA + + L W+G+S V LFQ AR+ AP I+FV++ D G RG
Sbjct: 616 KAVATEADSTFFSVSSSDL-GSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRG 792
Query: 791 KFIHTENQDHEAFINQLLVELDGFEKQD-GVVLMATTRNLKQIDEALQRPGRMDRIFHLQ 849
+ E++ +LLV++ G D V+++A T +D+A++R R D+ ++
Sbjct: 793 E--GNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIP 960
Query: 850 RPTQAERENI 859
P R+++
Sbjct: 961 LPDVKARQHM 990
>BP066038
Length = 445
Score = 83.2 bits (204), Expect = 2e-16
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Frame = -1
Query: 89 GTFQIAPAFALPTIPWVQFLSKN--KENKNQHEYSDCTQKVLDTVPSLLRTIEEVRKGNG 146
GTF+ APA +PW K KE HEYSDCT+ +L+T LR IEE+R+GNG
Sbjct: 439 GTFRAAPALPF-AVPWXXLWRKTXEKEKVKSHEYSDCTESLLETFSLFLRRIEELREGNG 263
Query: 147 DFEDVKRALEFVKLKKYEMEKEILE-RMHPVLMDLKEELRLLQIKEGEISWQMAEVNREH 205
+ + +E VKLK+ E++KEI+ ++P L ++ E L ++ EI ++ +E+
Sbjct: 262 GINEXELXMEPVKLKREEIQKEIMXGXLYPELRKMRREKGQLMKRDSEIIDEILVAKKEY 83
Query: 206 RKL 208
KL
Sbjct: 82 GKL 74
>TC16655 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
partial (39%)
Length = 934
Score = 82.8 bits (203), Expect = 3e-16
Identities = 43/97 (44%), Positives = 61/97 (62%)
Frame = +3
Query: 677 IPLNNFSSIDSMKEEISEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAE 736
+ ++ + +D K++ EVV FL+ P F +GAR P+GVL++G GTGKT LA AIA E
Sbjct: 645 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGE 824
Query: 737 AKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLA 773
A VP I + M+VG AS VR+LF+ A++ A
Sbjct: 825 AGVPFFSISGSEF-VEMFVGVGASRVRDLFKKAKENA 932
>CB826675
Length = 551
Score = 80.5 bits (197), Expect = 1e-15
Identities = 44/141 (31%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Frame = +1
Query: 678 PLNNFSSIDSMKEEISEVVAFLQNPRA----FQEMGARAPRGVLIVGERGTGKTSLAMAI 733
P +++ + ++++I E+V + P FQ++G R P+GVL+ G GTGKT +A A
Sbjct: 121 PTEDYNDVGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 300
Query: 734 AAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFI 793
AA+ +++ QL M++G A VR+ FQ A++ +P I+F+++ D R
Sbjct: 301 AAQTNATFLKLAGPQL-VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSE 477
Query: 794 HTENQDHEAFINQLLVELDGF 814
+ +++ + + +LL +LDGF
Sbjct: 478 VSGDREVQRTMLELLNQLDGF 540
>CN825587
Length = 663
Score = 76.6 bits (187), Expect = 2e-14
Identities = 44/117 (37%), Positives = 63/117 (53%)
Frame = +2
Query: 769 ARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRN 828
A+ AP I+F+++ D RG + N + E INQLL E+DGF GV+++A T
Sbjct: 2 AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNR 181
Query: 829 LKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEYVDWKKVAEKT 885
+D AL RPGR DR + RP A R IL ++ L + VD+ K+A +T
Sbjct: 182 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR---GKALAKDVDFDKIARRT 343
>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (65%)
Length = 901
Score = 76.6 bits (187), Expect = 2e-14
Identities = 42/146 (28%), Positives = 78/146 (52%), Gaps = 1/146 (0%)
Frame = +3
Query: 669 MKRVKKPPIPLNNFSSIDSMKEEISEVVAF-LQNPRAFQEMGARAPRGVLIVGERGTGKT 727
+ + +KP + N+ D K+EI E V L + ++++G PRGVL+ G GTGKT
Sbjct: 465 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 644
Query: 728 SLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAG 787
LA A+A + + + ++G+ VR++F+ A++ AP I+F+++ D A
Sbjct: 645 MLAKAVANHTTAAFIRVVGSEF-VQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIAT 821
Query: 788 VRGKFIHTENQDHEAFINQLLVELDG 813
R +++ + + +LL ++DG
Sbjct: 822 ARFDAQTGADREVQRILMELLNQMDG 899
>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
Length = 532
Score = 74.7 bits (182), Expect = 8e-14
Identities = 48/163 (29%), Positives = 80/163 (48%), Gaps = 1/163 (0%)
Frame = +1
Query: 714 RGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELFQTARDLA 773
+G+L+ G GTGKT LA A+A E K I A + W G S V+ LFQ AR A
Sbjct: 37 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV-VSKWRGDSEKLVKVLFQLARHHA 213
Query: 774 PVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDGFEKQDGVVLMATTRNLK-QI 832
P +F+++ D RG+ +E++ +LL+++DG + D +V + NL ++
Sbjct: 214 PSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWEL 390
Query: 833 DEALQRPGRMDRIFHLQRPTQAERENILYSAAKETMDDQLVEY 875
D A+ R R+++ + P R + D++ + Y
Sbjct: 391 DAAMLR--RLEKRILVPLPEPEARVAMFEELLPPQPDEESIPY 513
>TC12379 homologue to UP|O04327 (O04327) Cell division protein FtsH isolog,
partial (15%)
Length = 505
Score = 72.8 bits (177), Expect = 3e-13
Identities = 47/137 (34%), Positives = 72/137 (52%)
Frame = +1
Query: 749 LEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLL 808
L + + S S R L+Q A++ AP ++F+++ D RG + Q+ +A +NQLL
Sbjct: 19 LSLSLSLSLSLSLSRALYQEAKENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 198
Query: 809 VELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENILYSAAKETM 868
V LDGFE + V+ +A+T +D AL RPGR DR + +P R IL A++
Sbjct: 199 VCLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRIEILKVHARK-- 372
Query: 869 DDQLVEYVDWKKVAEKT 885
+ VD+ VA T
Sbjct: 373 -KPIAGDVDYMAVASMT 420
>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
Length = 1418
Score = 71.6 bits (174), Expect = 7e-13
Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 8/144 (5%)
Frame = +2
Query: 655 RREGVDPIKTAFEHMKR-----VKKPPIPLNNFSSIDSMKEEISEVVAFLQNPRAFQEM- 708
R G + + A E K+ + P +P + + +++ ++ +Q P +++
Sbjct: 125 RIPGKEDVMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLF 304
Query: 709 --GARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGMWVGQSASNVRELF 766
G R GVL+ G GTGKT LA A+A E + + +K +L M++G+S NVR++F
Sbjct: 305 ASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL-INMYIGESEKNVRDIF 481
Query: 767 QTARDLAPVILFVEDFDLFAGVRG 790
Q AR P ++F ++ D A G
Sbjct: 482 QKARSARPCVIFFDELDSLAPASG 553
>AV408284
Length = 425
Score = 68.6 bits (166), Expect = 6e-12
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Frame = +1
Query: 685 IDSMKEEISEVVAF-LQNPRAFQEMGARAP-RGVLIVGERGTGKTSLAMAIAAEAKVPVV 742
++S+KE + E+V L+ P F P +GVL+ G GTGKT LA AIA E+ +
Sbjct: 1 LESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180
Query: 743 EIKAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEA 802
++ L W G + V +F A L P I+F+++ D F G R DHEA
Sbjct: 181 NVRISNL-MSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQR------RTTDHEA 339
Query: 803 FIN---QLLVELDGFEKQDGVVLM 823
+N + + DGF +M
Sbjct: 340 LLNMKTEFMALWDGFTTDQNARVM 411
>BF177891
Length = 390
Score = 62.4 bits (150), Expect = 4e-10
Identities = 38/125 (30%), Positives = 60/125 (47%), Gaps = 1/125 (0%)
Frame = +1
Query: 695 VVAFLQNPRAFQEMGARAP-RGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQLEAGM 753
V+ ++ P F P +G+L+ G GTGKT +A A+A EA + + L +
Sbjct: 22 VILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTS-K 198
Query: 754 WVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDG 813
W G + + LF A LAPVI+FV++ D G RG E++ N+ + DG
Sbjct: 199 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMAAWDG 372
Query: 814 FEKQD 818
++
Sbjct: 373 LRSKE 387
>TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
proteasome subunit 7) (26S proteasome AAA-ATPase subunit
RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
partial (46%)
Length = 867
Score = 57.4 bits (137), Expect = 1e-08
Identities = 33/106 (31%), Positives = 53/106 (49%)
Frame = +2
Query: 754 WVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQDHEAFINQLLVELDG 813
+VG+ A VRELFQ AR I+F ++ D G R + + + + +++ +LDG
Sbjct: 35 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 214
Query: 814 FEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENI 859
F+ + + ++ T +D AL RPGR+DR P R I
Sbjct: 215 FDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI 352
>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (TAT-binding
homolog 4), partial (20%)
Length = 389
Score = 56.2 bits (134), Expect = 3e-08
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Frame = +3
Query: 686 DSMKEEISEVVAFLQNPRAFQEMGARAP-RGVLIVGERGTGKTSLAMAIAAEAKVPVVEI 744
D++KE V+ L+ P F + P +G+L+ G GTGKT LA A+A EA + I
Sbjct: 6 DTLKEL---VMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 176
Query: 745 KAQQLEAGMWVGQSASNVRELFQTARDLAPVILFVEDFDLFAGVRGKFIHTENQ-DHEA- 802
+ W G+ V+ +F A ++P ++FV++ D R EN +HEA
Sbjct: 177 SMSSI-TSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDXMLXRR------ENPGEHEAM 335
Query: 803 --FINQLLVELDG 813
N+ +V DG
Sbjct: 336 RKMXNEFMVHWDG 374
>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
RPT4a, partial (49%)
Length = 648
Score = 45.1 bits (105), Expect = 7e-05
Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 4/59 (6%)
Frame = +2
Query: 681 NFSSIDSMKEEISE----VVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAA 735
++S++ + ++I E + L NP F +G + P+GVL+ G GTGKT LA AIA+
Sbjct: 452 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 628
>AV422700
Length = 472
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/78 (32%), Positives = 39/78 (49%), Gaps = 1/78 (1%)
Frame = +2
Query: 690 EEISEVVAFLQN-PRAFQEMGARAPRGVLIVGERGTGKTSLAMAIAAEAKVPVVEIKAQQ 748
E + E++ F Q +++G + PRG+L+ G GTGKTSL A+ E + I
Sbjct: 236 EALRELIIFPQRFSHEARKLGLKWPRGLLLYGPPGTGKTSLVRAVVQECGAHLTIISPHS 415
Query: 749 LEAGMWVGQSASNVRELF 766
+ G+S +RE F
Sbjct: 416 VHRA-HAGESERILREAF 466
>AV408157
Length = 423
Score = 39.7 bits (91), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 814 FEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAERENIL 860
F+ V+++ T +D AL+RPGR DR+ ++ P + RE IL
Sbjct: 3 FDSNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRIGREAIL 143
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.332 0.143 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,832,481
Number of Sequences: 28460
Number of extensions: 277989
Number of successful extensions: 2256
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2246
length of query: 1184
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1084
effective length of database: 2,051,600
effective search space: 2223934400
effective search space used: 2223934400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135461.15