TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135461.14 - phase: 0 /pseudo
         (1361 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP042574                                                              110  4e-31
TC10983 similar to PIR|T00713|T00713 helicase homolog F22O13.8 -...    56  4e-08
AV777541                                                               29  4.4
BP080140                                                               29  5.8
TC8361 homologue to UP|Q9ST36 (Q9ST36) JPR ORF1 protein, partial...    28  7.5
CN825611                                                               28  9.8
TC18994                                                                28  9.8

>BP042574 
          Length = 505

 Score =  110 bits (274), Expect(2) = 4e-31
 Identities = 57/66 (86%), Positives = 60/66 (90%)
 Frame = +3

Query: 40  ILSLISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMAAFKE 99
           I  L+SELLEVESKAAEAQE LEEESLAKVESEVRQEL+QTLQGDDLETAVADEM  FKE
Sbjct: 306 IEDLVSELLEVESKAAEAQEALEEESLAKVESEVRQELKQTLQGDDLETAVADEMTTFKE 485

Query: 100 EWEAAL 105
           +WEA L
Sbjct: 486 DWEAVL 503



 Score = 43.1 bits (100), Expect(2) = 4e-31
 Identities = 26/43 (60%), Positives = 29/43 (66%), Gaps = 1/43 (2%)
 Frame = +1

Query: 2   WREYLRMKW*-ILRVLLVVLQMTTQTMRDLRLLILMTNCILSL 43
           WRE L M+W  ILRVLL VL M   TMRDL LL LMT  + +L
Sbjct: 163 WREKLMMRWWWILRVLLAVLSMMILTMRDLCLLKLMTK*LRNL 291


>TC10983 similar to PIR|T00713|T00713 helicase homolog F22O13.8 - Arabidopsis
            thaliana {Arabidopsis thaliana;} , partial (3%)
          Length = 572

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 38/83 (45%), Positives = 46/83 (54%), Gaps = 3/83 (3%)
 Frame = +2

Query: 1280 GRSSESTDW*VCA*SKARSVKGRRRTT*SRNLAAFN*AEKSFHKAAMHQPCTFADT*KPE 1339
            GRS++ST  *V A*SKARS  G+      R+        ++F  A MHQPC F DT K  
Sbjct: 2    GRSAKSTAR*VYA*SKARSGGGKAACI--RDPHPLTKTSQTFLNAEMHQPCAFVDTSKSR 175

Query: 1340 NKNWGLYSLRGMCP---GGKVGR 1359
            +K W  Y L GMC    GGK+ R
Sbjct: 176  SKIW*KYRLWGMCTMR*GGKI*R 244


>AV777541 
          Length = 466

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +1

Query: 44  ISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMAAFKEEWEA 103
           +  L E++ K  EAQ   EEE  A   +   + +EQ  + ++   A  +E     ++   
Sbjct: 145 LQRLAEMQRKKEEAQIRREEERKASSAAREARAIEQLRRKEERAKAQQEEAELLAQKLAE 324

Query: 104 ALDDLETESSHLLEQL 119
            L++ E      LEQ+
Sbjct: 325 RLNESEQRRKIYLEQI 372


>BP080140 
          Length = 357

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 7/18 (38%), Positives = 12/18 (65%)
 Frame = +1

Query: 719 ERWCIVNRLCCFPEFVFW 736
           +RW +    CC P+++FW
Sbjct: 235 DRWSVFKTPCCSPQYIFW 288


>TC8361 homologue to UP|Q9ST36 (Q9ST36) JPR ORF1 protein, partial (92%)
          Length = 1523

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 13/48 (27%), Positives = 24/48 (49%)
 Frame = +2

Query: 142 CTEAWKKRNHWVGSQATTEIASSVSDAEKYLQINRPVRRRHGKLLEEG 189
           C    K+RN+WVG   T + +++ +  E+   I R + R++      G
Sbjct: 407 CKWLCKRRNYWVGEHRTYQ*STT*NHVERI*AIKRRIPRQNSHCFNHG 550


>CN825611 
          Length = 623

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 722 CIVNRLCCFPEFVFWKARER 741
           CI +  CC  E +FW+ RER
Sbjct: 347 CIWSSFCC*QEIMFWRDRER 406


>TC18994 
          Length = 514

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 25/74 (33%), Positives = 36/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 46  ELLEVESKAAEAQETLEEESLAKVESEVRQEL--EQTLQGDDLE--TAVADEMAAFKEEW 101
           +LLE+          +EEES +K+E E R EL  E   + + ++  TA  +E     +  
Sbjct: 97  QLLELTMADDSFANGVEEESTSKLERE-RDELVAENVAKKEQIKKLTAELEESRKMTDVI 273

Query: 102 EAALDDLETESSHL 115
            A   DLETE S L
Sbjct: 274 AARASDLETELSRL 315


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.362    0.161    0.621 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,551,579
Number of Sequences: 28460
Number of extensions: 331429
Number of successful extensions: 3235
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2386
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 2545
length of query: 1361
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1260
effective length of database: 2,023,140
effective search space: 2549156400
effective search space used: 2549156400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 61 (28.1 bits)