TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135416.5 + phase: 0 /pseudo
         (653 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065719                                                               45  3e-05
TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13...    30  0.94
AV774899                                                               28  3.6
BP053377                                                               28  4.6

>BP065719 
          Length = 567

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 31/111 (27%), Positives = 50/111 (44%)
 Frame = +3

Query: 3   QFSGSPTEDPNLHISSFLRLSGTIKENQEALRLHLFPFSLRDRASAWFHSLEVGSITSWD 62
           +FSG   E    HI+ +   +G +  N E L++  FP SL   A  WF +L   S+ +W 
Sbjct: 195 KFSGDSGESTVEHIARYQIEAGDLAIN-ENLKMKYFPSSLTKNAFTWFTTLAPRSVHTWA 371

Query: 63  DMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHH 113
            + R    +FF        +D +    +K  ES+ +   RF+ +   C  H
Sbjct: 372 QLERIFHEQFFRGECKVSXKD-LASVKRKPAESIDDYLNRFRMLKSRCFTH 521


>TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13.21
           protein), partial (26%)
          Length = 744

 Score = 30.4 bits (67), Expect = 0.94
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +3

Query: 37  LFPFSLRDRASAWFHSLEVGSITSWDDMRRALLARFFPP 75
           LF   L + ASAW  SL  GS+ S+  + + LL   FPP
Sbjct: 627 LFVVKLSE*ASAWAFSLGNGSVNSFWKLLQFLLIDVFPP 743


>AV774899 
          Length = 539

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
 Frame = +2

Query: 28  ENQEALRLH--LFPFSL-RDRASAWFHSLEVGSITSWDDMRRALLARFFPP-----SKTA 79
           + +E LRLH  + P  L R R + WF +       +  +  +    + +PP     + T 
Sbjct: 83  KGKEKLRLHSSIDPQRLPRKRCAIWFETNTRAMFKTGRE--KT*ETKLYPPR*QP*AMTI 256

Query: 80  KLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGL 115
           K    I  +N+KD ++L     R  E  R+C HHGL
Sbjct: 257 KKSFPIASWNKKDKDNL----RRRGEGSRMCLHHGL 352


>BP053377 
          Length = 484

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 15/46 (32%), Positives = 24/46 (51%)
 Frame = +2

Query: 329 HTHQNA*DPNLPSGPTSGHLFSKNRSLSWST*NKPQSSCQRYFSWG 374
           H H N  DP L S        S+ ++L+W T*++  S+  ++  WG
Sbjct: 287 HFHLNHHDPQLTSS-------SELKTLTWVT*SQKHSNYPQHLCWG 403


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.365    0.161    0.617 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,208,678
Number of Sequences: 28460
Number of extensions: 177709
Number of successful extensions: 1940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 1153
length of query: 653
length of database: 4,897,600
effective HSP length: 96
effective length of query: 557
effective length of database: 2,165,440
effective search space: 1206150080
effective search space used: 1206150080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 58 (26.9 bits)