TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135416.15 - phase: 0 /pseudo
         (662 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP052828                                                               93  1e-19
BP065719                                                               41  5e-04
AU251673                                                               33  0.19
BP041136                                                               30  1.6
AV767128                                                               30  1.6
TC15142 similar to UP|Q945R8 (Q945R8) Cysteine proteinase (Fragm...    30  1.6
CN825689                                                               29  2.1
TC14312 similar to UP|Q8J174 (Q8J174) RfeF, partial (7%)               28  4.7
TC13256 similar to UP|Q9XI49 (Q9XI49) F9L1.14 protein, partial (...    28  6.2
TC10866 similar to UP|Q9FKP4 (Q9FKP4) Similarity to kinesin heav...    27  8.0
TC17040                                                                27  8.0

>BP052828 
          Length = 523

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
 Frame = +2

Query: 506 PCMIGSETLNQALCDLGASVSLLPLPLF*RLGLGELKLTETTLKLADRSDIQPVGNVEDI 565
           PC IG       + DLGA ++++P  ++  L  G L+ T   ++LA+RS+ +P G VED+
Sbjct: 71  PCTIGDNKYENCMLDLGAGINVMPTSIYNILHPGPLQHTGLIVQLANRSNARPKGVVEDV 250

Query: 566 PVKIEGIDIPTDFMVLDID---EDNECPIILGRPFLATAGAIVDVQNGRIIFQVSDELIG 622
            V++  +  P DF +LD++   + +  PIILGRPF+ TA   +DV NG +  +  D +  
Sbjct: 251 LVQVNELIFPADFYILDMEGETKSSRAPIILGRPFMKTAKTKIDVDNGTMSMEFGDIIAK 430

Query: 623 FELENYMKGP 632
           F +++ MK P
Sbjct: 431 FNIDDAMKHP 460


>BP065719 
          Length = 567

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 28/97 (28%), Positives = 44/97 (44%)
 Frame = +3

Query: 32  AIKENQEAVRLHLFPFSLRDRARAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQ 91
           AI EN   +++  FP SL   A  WF +L   S+ +W  + R F  +FF        +D 
Sbjct: 267 AINEN---LKMKYFPSSLTKNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECKVSXKD- 434

Query: 92  ITRFNQKDGEYLYEAWERFKEMLRLCPHHGLEKWLIV 128
           +    +K  E + +   RF+ +   C  H  E  L+V
Sbjct: 435 LASVKRKPAESIDDYLNRFRMLKSRCFTHVSEHELVV 545


>AU251673 
          Length = 413

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = +2

Query: 42  LHLFPFSLRDRARAWFHSLE----VGSIT-SWDDMRRAFLARFFPPSKTAKLRDQITRFN 96
           + L  F L   AR W++ L     VGS   +W D    F+ RF P S          R  
Sbjct: 23  VELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVRDFERLE 202

Query: 97  QKDGEYLYEAWERFKEMLRLCPHHGLEK 124
           Q +G  + E    F  + R  P+  LE+
Sbjct: 203 QAEGMTVSEYSAHFTHLSRYVPYPLLEE 286


>BP041136 
          Length = 564

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 285 NNQRVAKKSSLEILLENCIANQ-NKNLQELKNQTGFLNGSLSKLTTKVDSIA 335
           N Q + +K SL  LL +C+ +  + NL    N+TGF+    + L   +D  A
Sbjct: 347 NTQMLTRKPSLTSLLPHCLVSAVSVNLTPSLNETGFILRVCTNLVISIDMSA 502


>AV767128 
          Length = 267

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 573 DIPTDFMVLDIDEDNECPIILG 594
           DIP D MV +ID+DN+ PI  G
Sbjct: 247 DIPIDDMVKEIDQDNDGPIDFG 182


>TC15142 similar to UP|Q945R8 (Q945R8) Cysteine proteinase (Fragment),
           partial (36%)
          Length = 646

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = -3

Query: 494 PTKLRDPGSFAIPCMIGSETLNQALCDLGASVSLLPLPLF*RLGLGELKLTETTLKLADR 553
           PT+ R P S  +P M G ET    +C   A + +   P F R        TETTLKL   
Sbjct: 212 PTR-RTP*SKCLPQMYGHETPPMYVCIKTALIPIARGPCFTRFAAI*SSSTETTLKLDAE 36

Query: 554 SDIQPVGNVE 563
           + I    N++
Sbjct: 35  AAILLFSNLQ 6


>CN825689 
          Length = 639

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (53%)
 Frame = +1

Query: 325 SKLTTKVDSIATHTKMLKTQISQVAQQVATSSQTPGV 361
           SKL T +  +   T  +KT + QV +  A  SQT GV
Sbjct: 127 SKLATFLQLLEKGTSSIKTSLCQVIESTAAISQTDGV 237


>TC14312 similar to UP|Q8J174 (Q8J174) RfeF, partial (7%)
          Length = 622

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 268 YKNPQGSYGQVAPPGYTNN 286
           Y  PQGSYGQ APP Y N+
Sbjct: 199 YGAPQGSYGQ-APPSYGNS 252


>TC13256 similar to UP|Q9XI49 (Q9XI49) F9L1.14 protein, partial (22%)
          Length = 552

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 3/82 (3%)
 Frame = -1

Query: 9   ISFLDHPLRIQISIFLPSLRLSGAIKENQEA---VRLHLFPFSLRDRARAWFHSLEVGSI 65
           +SFLDHPL +++  FL SL  + A+     A   + LH+ P     R       L++   
Sbjct: 438 LSFLDHPLWLELKAFL-SL*PTAAVPFTASAA*ILCLHIIPCISIFRQ---LPILQLDDS 271

Query: 66  TSWDDMRRAFLARFFPPSKTAK 87
                +RR  + R  P S+T K
Sbjct: 270 R*KSTLRRRLIIRIIPVSRTMK 205


>TC10866 similar to UP|Q9FKP4 (Q9FKP4) Similarity to kinesin heavy chain,
           partial (8%)
          Length = 537

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 24/81 (29%), Positives = 43/81 (52%)
 Frame = -2

Query: 449 PFAEALSRMPLYAKFLKEIFSKKKAIDHNETKALTRENSAIIKKPPTKLRDPGSFAIPCM 508
           PF+ +L+      K L++     K + + E +A  R  SA++ +  +KLR  GS A  C 
Sbjct: 302 PFSSSLT------KSLRDGTLVAKVLYNLEYRA--RVPSAVLARA-SKLRASGSSANTCF 150

Query: 509 IGSETLNQALCDLGASVSLLP 529
           I S+ +   +  LGA++++ P
Sbjct: 149 ISSKLMFSKMEGLGATLTISP 87


>TC17040 
          Length = 523

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 587 NECPI------ILGRPFLATAGAIVDVQNGRIIFQVSDELIGFELENY 628
           N+C +      + G+  L    +++ +  GRI+ +V D L+G   EN+
Sbjct: 35  NQCSLWKIRYRLFGKRILLWTRSLLQLLRGRILVEVGDGLVGVRNENH 178


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,866,490
Number of Sequences: 28460
Number of extensions: 139397
Number of successful extensions: 697
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of query: 662
length of database: 4,897,600
effective HSP length: 96
effective length of query: 566
effective length of database: 2,165,440
effective search space: 1225639040
effective search space used: 1225639040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)