BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135396.7 - phase: 0 /pseudo
(270 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidat... 132 5e-32
CB828263 118 9e-28
TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-contain... 117 3e-27
AV406755 112 5e-26
AV779547 112 9e-26
BP045440 105 1e-23
BP065014 93 5e-20
BP065724 77 4e-15
TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 67 2e-12
AI967395 63 5e-11
TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like... 56 6e-09
TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-... 53 5e-08
TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like pr... 52 8e-08
BP068235 43 4e-07
TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partia... 48 2e-06
TC12592 48 2e-06
AV406565 46 6e-06
AV777598 46 8e-06
AV408271 40 3e-04
BP058043 32 0.15
>TC13186 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (6%)
Length = 586
Score = 132 bits (333), Expect = 5e-32
Identities = 74/161 (45%), Positives = 101/161 (61%)
Frame = +1
Query: 18 FTYDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGGDEITSSLFKVIEESRIF 77
F YDVF+S DTR+GF+G+LY+ L KGI TF DD + D +++ K IE SRI
Sbjct: 97 FIYDVFISLITSDTRFGFSGDLYTALSDKGILTFIDDGLPRPDDIMSTVNSKAIESSRIA 276
Query: 78 IPVLSINYASSSFCLDELVHIIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKALDDHIE 137
I V+S NYASSSFCLDEL++I+ +E L+ P+FY VEPS VR+ KG +GKA H E
Sbjct: 277 IVVISENYASSSFCLDELMYILKRREEKGLLIWPVFYQVEPSDVRYQKGGFGKAFASHEE 456
Query: 138 RFQNNKHSMDRLQKWKMALTQTANFSGHQINPRNGYECEFI 178
RF ++ +++KW+ AL Q A+ ++GY I
Sbjct: 457 RFGSDS---AKVRKWRNALKQVADLKAFHFF-KHGYHTSLI 567
>CB828263
Length = 570
Score = 118 bits (296), Expect = 9e-28
Identities = 61/137 (44%), Positives = 88/137 (63%)
Frame = +2
Query: 56 ELQGGDEITSSLFKVIEESRIFIPVLSINYASSSFCLDELVHIIHCFKENRRLVLPIFYD 115
+LQ GDEI+SSL + IEE+++ + V S NY +S +CLDELV I+ C + ++VLP+FYD
Sbjct: 5 DLQRGDEISSSLLRAIEEAKLSVIVFSKNYGNSKWCLDELVKILECKRTRGQIVLPVFYD 184
Query: 116 VEPSHVRHHKGSYGKALDDHIERFQNNKHSMDRLQKWKMALTQTANFSGHQINPRNGYEC 175
++PSHVR+ G+Y +A H +D++QKW+ AL + AN SG + N E
Sbjct: 185 IDPSHVRNQTGTYAEAFVKH--------GQVDKVQKWREALREAANLSGWDCSV-NRMES 337
Query: 176 EFIEKIVKYISNKINHV 192
E IEKI K + K+N V
Sbjct: 338 EVIEKIAKDVLEKLNRV 388
>TC19146 similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing protein
TSDC, partial (12%)
Length = 701
Score = 117 bits (292), Expect = 3e-27
Identities = 66/154 (42%), Positives = 89/154 (56%)
Frame = +1
Query: 39 LYSDLCKKGIHTFFDDRELQGGDEITSSLFKVIEESRIFIPVLSINYASSSFCLDELVHI 98
LY L ++G TF DD L GG+EI SL E+SR+ I V S NY SS+CLDELV I
Sbjct: 1 LYHALRREGFKTFMDDEGLVGGNEIAKSLLDASEKSRLSIIVFSENYGYSSWCLDELVKI 180
Query: 99 IHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKALDDHIERFQNNKHSMDRLQKWKMALTQ 158
+ C + ++LV PIFY VE S V + SY A+ H + + + D ++KW+ AL+
Sbjct: 181 VECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDS---DEVKKWRSALSA 351
Query: 159 TANFSGHQINPRNGYECEFIEKIVKYISNKINHV 192
A GH + N YE EFI+KIV+ NH+
Sbjct: 352 MAKLEGHNVK-ENKYEYEFIKKIVEKAIAIENHM 450
>AV406755
Length = 425
Score = 112 bits (281), Expect = 5e-26
Identities = 57/114 (50%), Positives = 80/114 (70%)
Frame = +3
Query: 18 FTYDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGGDEITSSLFKVIEESRIF 77
++YDVFLSFRG ++R FT +LY+ L GI F D+ ELQ G++I+SSL K IE+SRI
Sbjct: 78 WSYDVFLSFRGEESRRSFTSHLYTALKNAGIKVFMDN-ELQRGEDISSSLLKAIEDSRIA 254
Query: 78 IPVLSINYASSSFCLDELVHIIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKA 131
I + S NY S +CLDEL II C + + V+P+FY+V+PS +R +G+ G+A
Sbjct: 255 IIIFSTNYTGSKWCLDELEKIIECQRTIGQEVMPVFYNVDPSDIRKQRGTVGEA 416
>AV779547
Length = 556
Score = 112 bits (279), Expect = 9e-26
Identities = 64/151 (42%), Positives = 87/151 (57%)
Frame = +1
Query: 24 LSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGGDEITSSLFKVIEESRIFIPVLSI 83
+SFRG DTR FT +L L KG TF DD L+ G I++ L + IE S+I I V S
Sbjct: 109 VSFRGEDTRNNFTDHLLGALYGKGFVTFKDDTMLRKGKNISTELIQAIEGSQILIVVFSK 288
Query: 84 NYASSSFCLDELVHIIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKALDDHIERFQNNK 143
YASS++CL EL I R+ VLP+ DV PS VR G+YG+A H ERF K
Sbjct: 289 YYASSTWCLQELAKIADGIVGKRQTVLPVVCDVTPSEVRKQSGNYGEAFLKHEERF---K 459
Query: 144 HSMDRLQKWKMALTQTANFSGHQINPRNGYE 174
++ +Q+W+ AL + A+ SG + + +E
Sbjct: 460 EDLEMVQRWRKALAEVADLSGWDVTNKPEHE 552
>BP045440
Length = 535
Score = 105 bits (261), Expect = 1e-23
Identities = 62/149 (41%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = -3
Query: 20 YDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGGDEITSSLFKVIEESRIFIP 79
Y +F+SFRG+DTR FT LY LC++G TF DD L+GG I L IEESR I
Sbjct: 527 YQIFISFRGMDTRDDFTKPLYQGLCREGFVTFKDDESLEGGSPI-EKLLDDIEESRFAII 351
Query: 80 VLSINYASSSFCLDELVHIIHCFKE--NRRLVLPIFYDVEPSHVRHHKGSYGKALDDHIE 137
+LS NYA S +CL EL I+ C + +LVLP +V P+ VRH Y A+ H
Sbjct: 350 ILSKNYAESEWCLKELSKILECKDQEGKNQLVLPSSTEVTPTEVRHVINRYADAMAKH-- 177
Query: 138 RFQNNKHSMDRLQKWKMALTQTANFSGHQ 166
+ N +Q WK AL +G +
Sbjct: 176 --EKNGIDSKTIQAWKKALFDVCTLTGFE 96
>BP065014
Length = 498
Score = 92.8 bits (229), Expect = 5e-20
Identities = 52/123 (42%), Positives = 74/123 (59%)
Frame = -2
Query: 51 FFDDRELQGGDEITSSLFKVIEESRIFIPVLSINYASSSFCLDELVHIIHCFKENRRLVL 110
F DD L+ G I L IEESR+ I VLS N+A S +CL ELV I+ C K+ + LVL
Sbjct: 497 FKDDLSLEDGAPI-EELLGAIEESRVAIVVLSENFADSKWCLKELVKILDCRKKKKPLVL 321
Query: 111 PIFYDVEPSHVRHHKGSYGKALDDHIERFQNNKHSMDRLQKWKMALTQTANFSGHQINPR 170
PIFY VEP+++RH KG YG+A+ +H ++ + + +++W AL+ + G P
Sbjct: 320 PIFYKVEPTNIRHLKGRYGEAMAEHEKKLGKDSQT---VREWTQALSDISYLKG---EPY 159
Query: 171 NGY 173
GY
Sbjct: 158 KGY 150
>BP065724
Length = 495
Score = 76.6 bits (187), Expect = 4e-15
Identities = 39/108 (36%), Positives = 64/108 (59%)
Frame = -1
Query: 85 YASSSFCLDELVHIIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKALDDHIERFQNNKH 144
YA SS+CL+E+V I+ C ++N +LV PIFY VEPS VRH + SY KA+ R+ +
Sbjct: 495 YADSSWCLEEVVKILECKQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKQETRYGKDS- 319
Query: 145 SMDRLQKWKMALTQTANFSGHQINPRNGYECEFIEKIVKYISNKINHV 192
++++KW+ +L+Q + +GY + + K + N IN++
Sbjct: 318 --EKVKKWRSSLSQVCDLKAFHYKENSGYVLYLL--LFKAMHNMINYL 187
>TC15876 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (13%)
Length = 558
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/90 (36%), Positives = 52/90 (57%)
Frame = +1
Query: 98 IIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKALDDHIERFQNNKHSMDRLQKWKMALT 157
I+ C ++N +LV PIFY VEPS VRH + SY KA+ R+ + ++++KW+ +L+
Sbjct: 16 ILECXQKNDQLVWPIFYKVEPSDVRHQRNSYEKAMIKPETRYGKDS---EKVKKWRSSLS 186
Query: 158 QTANFSGHQINPRNGYECEFIEKIVKYISN 187
Q + +GYE FI I+K + N
Sbjct: 187 QVCDLKAFHYKENSGYERAFIPDIIKDVMN 276
>AI967395
Length = 205
Score = 63.2 bits (152), Expect = 5e-11
Identities = 29/62 (46%), Positives = 43/62 (68%)
Frame = +3
Query: 71 IEESRIFIPVLSINYASSSFCLDELVHIIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGK 130
I+ESR+ I V S +YA S+ CL+ELV+I+ N +LV P++Y VE +RH +G YG+
Sbjct: 3 IQESRLIIVVFSEHYAVSASCLNELVNIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGE 182
Query: 131 AL 132
A+
Sbjct: 183 AM 188
>TC9932 weakly similar to UP|Q93YA7 (Q93YA7) Resistance gene-like, partial
(5%)
Length = 689
Score = 56.2 bits (134), Expect = 6e-09
Identities = 26/60 (43%), Positives = 39/60 (64%)
Frame = -2
Query: 12 SSFSYGFTYDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGGDEITSSLFKVI 71
SS ++ + YDVF++FRG DTR+ F +LY+ L G++ F DD L+ G E+ L K+I
Sbjct: 226 SSSNHQWIYDVFINFRGKDTRHSFVSHLYTALSNAGVNVFLDDENLERGLELEPELQKLI 47
>TC20188 weakly similar to UP|Q8S4X3 (Q8S4X3) TIR-similar-domain-containing
protein TSDC, partial (11%)
Length = 494
Score = 53.1 bits (126), Expect = 5e-08
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = +1
Query: 107 RLVLPIFYDVEPSHVRHHKGSYGKALDDHIERFQNNKHSMDRLQKWKMALTQTANFSGHQ 166
+LV PIFY++ S V + SYG A+ H F + +++QKWK AL++ A G
Sbjct: 4 QLVWPIFYEISXSDVSNQTKSYGHAMLAHENSFGKDS---EKVQKWKSALSEMAFLQGEH 174
Query: 167 INPRNGYECEFIEKIVKYISNKINHV 192
I N YE + I+KIV+ NH+
Sbjct: 175 IT-ENEYEYKLIQKIVEKALAVQNHM 249
>TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like protein
(Fragment), partial (36%)
Length = 859
Score = 52.4 bits (124), Expect = 8e-08
Identities = 24/69 (34%), Positives = 45/69 (64%)
Frame = +3
Query: 201 VGVESRVLKVNSLMDVGSNGEAQMIGIYGNRGMGKTTLARAVYNFIADQFDGLCFLHDVR 260
+GV+ + + SL+ S + ++IGI+G G+GKTT+A ++N Q++G+CFL V+
Sbjct: 549 IGVDKSIAHLESLLCQESK-DVRVIGIWGMGGIGKTTIAEEIFNRRHSQYEGICFLSKVK 725
Query: 261 ENSAKYGLE 269
+ K+G++
Sbjct: 726 DEL*KHGMQ 752
>BP068235
Length = 511
Score = 42.7 bits (99), Expect(2) = 4e-07
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = -1
Query: 92 LDELVHIIHCFKENRRLVLPIFYDVEPSHVRHHKGSYGKALD-DHIERFQNNKHSMDRLQ 150
L L + C K +L+ P Y VEPS +R+ SYG AL + F N+ +++Q
Sbjct: 475 LMNLSRFLECKKMKNQLLWPCPYKVEPSDIRYRPSSYGTALA*TRTDAFGNDS---EKIQ 305
Query: 151 KWKMALTQTANFSGHQINPRNGYECEFIEKIVK 183
WK AL + + P E EFI++I++
Sbjct: 304 TWKSALF*SFPLLWKGL-PTRATEYEFIQRIME 209
Score = 26.9 bits (58), Expect(2) = 4e-07
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -3
Query: 81 LSINYASSSFCLDELVHI 98
LS NYA S+ CLDELV I
Sbjct: 509 LSENYAYSARCLDELVQI 456
>TC12663 weakly similar to UP|Q84ZV8 (Q84ZV8) R 3 protein, partial (4%)
Length = 494
Score = 48.1 bits (113), Expect = 2e-06
Identities = 23/44 (52%), Positives = 30/44 (67%)
Frame = +3
Query: 15 SYGFTYDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQ 58
S+ T++VFL+FRG DT +GF L L KGI+TF +D ELQ
Sbjct: 12 SHVLTFNVFLNFRGSDTCHGFISFLCKSLLDKGIYTFINDEELQ 143
>TC12592
Length = 534
Score = 47.8 bits (112), Expect = 2e-06
Identities = 27/85 (31%), Positives = 49/85 (56%), Gaps = 7/85 (8%)
Frame = +3
Query: 107 RLVLPIFYDVEPSHVRHHKGSYGKALDDHIERFQNNKHSMDRLQKWKMALTQTANFSGH- 165
+LVLP+FY VEP+ +R+ KG +G+A+ + +F + ++ + +WK AL + G
Sbjct: 3 QLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNT---IHEWKQALRDISYLKGEP 173
Query: 166 -QINPRNGYE-----CEFIEKIVKY 184
++ NG + + IEKIV++
Sbjct: 174 CHVSNLNGEQDIRIRDQLIEKIVRF 248
>AV406565
Length = 207
Score = 46.2 bits (108), Expect = 6e-06
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +2
Query: 1 MAMLQSSVSPPSSFSYGFTYDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGG 60
MA +S S P +DVFLSFRG DTRY TG+L + L + + T+ D +LQ G
Sbjct: 35 MAWSTTSSSAPQQ-----KHDVFLSFRGEDTRYTCTGHLQATLTRLQVKTYI-DYDLQRG 196
Query: 61 DEI 63
DEI
Sbjct: 197DEI 205
>AV777598
Length = 371
Score = 45.8 bits (107), Expect = 8e-06
Identities = 19/23 (82%), Positives = 21/23 (90%)
Frame = +3
Query: 18 FTYDVFLSFRGIDTRYGFTGNLY 40
FTYDVFLSF G+DTR+ FTGNLY
Sbjct: 303 FTYDVFLSFCGVDTRFSFTGNLY 371
>AV408271
Length = 409
Score = 40.4 bits (93), Expect = 3e-04
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +1
Query: 20 YDVFLSFRGIDTRYGFTGNLYSDLCKKGIHTFFDDRELQGGDEI 63
YDVF+SFRG D R GF +L +K I+ F DD+ L+ G EI
Sbjct: 280 YDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDDK-LKRGQEI 408
>BP058043
Length = 375
Score = 31.6 bits (70), Expect = 0.15
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 15 SYGFTYDVFLSFRGIDTRYGFTGNLYSDLCKKGI 48
S+ FTYDVF+S RG R F +L +KGI
Sbjct: 169 SHNFTYDVFISLRGEVLRDTFIECFLKELMQKGI 68
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,945,435
Number of Sequences: 28460
Number of extensions: 70405
Number of successful extensions: 372
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of query: 270
length of database: 4,897,600
effective HSP length: 89
effective length of query: 181
effective length of database: 2,364,660
effective search space: 428003460
effective search space used: 428003460
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135396.7