BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135396.1 - phase: 0 /pseudo
(1436 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 172 3e-43
BP033602 150 2e-36
BP066094 132 2e-33
BP075943 134 8e-32
AU088980 100 3e-21
AV424544 92 4e-19
BP063694 92 8e-19
BP084332 91 2e-18
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 82 6e-16
AV766665 82 6e-16
BP054351 81 1e-15
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 79 5e-15
BP043850 76 3e-14
BP057233 75 6e-14
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 73 3e-13
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 72 8e-13
BP054557 69 4e-12
AV766088 67 2e-11
BP053302 62 6e-10
AV427921 60 3e-09
>AV780009
Length = 529
Score = 172 bits (437), Expect = 3e-43
Identities = 77/166 (46%), Positives = 117/166 (70%)
Frame = -1
Query: 1264 EAVFRILRYLKGTPGKGLMFRNRGHIQVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTW 1323
+A R+LRY+KG P +GL F ++++AY+D+DWAG + RRS +GY F+G +L++W
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1324 RSKKQNVVARSSAEAEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHN 1383
R+KKQ V+RSS+EAE+R++A CEV W+ Q LK+ P P+ ++CDN++A+ IAHN
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1384 PVLHDRTKHVEVDKHFIKEKIDSGEICMSYIPTKSQVADVLTKSLP 1429
P H+RTKH+E+D H ++ K+ +G I + I T Q+AD+ TK P
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKPCP 32
>BP033602
Length = 533
Score = 150 bits (378), Expect = 2e-36
Identities = 71/127 (55%), Positives = 90/127 (69%)
Frame = +3
Query: 422 KTIGTAREINGLYYFDETPLGNTAMFGSSRTSPPLVSNKIMLWHKRLGHPSFSYLKHLFP 481
K IG+A+ +GLYYF++T N A G S V ++IMLWH RLGHP+F YL+HLFP
Sbjct: 156 KMIGSAKMKDGLYYFEDT-FRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQYLRHLFP 332
Query: 482 EFSKEISSSQFHCDACHLAKDHRVSFNSRGYSASKPFYLIHSDVWGPSKIKTLSRKKWFV 541
+ K ++ S C++C LAK+ R + S+ Y AS+PFYLIHSDVWGPSKI T K+WFV
Sbjct: 333 DLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQFGKRWFV 512
Query: 542 TFIDDHT 548
TFIDDHT
Sbjct: 513 TFIDDHT 533
>BP066094
Length = 532
Score = 132 bits (332), Expect(2) = 2e-33
Identities = 66/150 (44%), Positives = 100/150 (66%)
Frame = +2
Query: 1023 AKINSIRILLSLAVNFNWTLHQYDVKNAFLNGELHEEVYMRLPPGFEDKLGRGKVCRLKK 1082
+K +IR+L+S +VN N LHQ +VK+AFLNG + EEVY+ PPG ED+ + +LKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1083 SLYGLKQSPRAWFERFGSVVKGHGFTQSQADHTMFFKHSREGKIAILIVYVDDIIMTGDD 1142
SLYGLKQ+PRAW+ER S + + + + D T+F K ++ I I+ +YVDDII +
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGSAN 442
Query: 1143 IGEISDLKRRLEAEFDIKDLGKLKYFLGME 1172
+ ++AEF+++ +G+LKYFLG++
Sbjct: 443 PSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 28.9 bits (63), Expect(2) = 2e-33
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = +3
Query: 1007 FTQTHGIDYQETFAPVAK 1024
++Q GIDY ETFAPVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>BP075943
Length = 547
Score = 134 bits (338), Expect = 8e-32
Identities = 71/161 (44%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
Frame = -3
Query: 1124 GKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKLKYFLGMEFARSKEGIFLN 1183
G L++YVDD+++ G+D+ EI +K L +F IKDLG+ KYFLG+E ARS GI LN
Sbjct: 536 GSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLN 357
Query: 1184 QRKYILDLLTETGMTGCKAAETPMDPNVK-LKSVAEDEIIDRERYQRLAGRLIYLSHTRP 1242
QRKY L L++++G G + N + L + + D Y+R+ GRL+YL+ TRP
Sbjct: 356 QRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRP 177
Query: 1243 DIAFAVSVISQFMHAPGPAHFEAVFRILRYLKGTPGKGLMF 1283
DI FAV+ +SQF+ AP H + + L+YL G+PG GL +
Sbjct: 176 DITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFY 54
>AU088980
Length = 360
Score = 99.8 bits (247), Expect = 3e-21
Identities = 53/110 (48%), Positives = 68/110 (61%)
Frame = +2
Query: 619 NGIAERKNRHLLEVTRAIMFSMNVPKYLWGNALLTACHLINRMPSRVLQYETPVQVLQNN 678
N I ERK+RH+L VTRA+MF +PK LW A+ A +LIN +PS +L+ + P Q L N+
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 679 FPTSRIITNIPLKVFGCLCYVYIPNIFRSKLDPKAEKCVFLGYASNKKGY 728
PT + LKVFG LCY KLDP+A KCVFLG+ + GY
Sbjct: 182 SPTL-----LDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>AV424544
Length = 276
Score = 92.4 bits (228), Expect = 4e-19
Identities = 43/82 (52%), Positives = 61/82 (73%)
Frame = +3
Query: 1106 GFTQSQADHTMFFKHSREGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKL 1165
G+ QS DH++F K R+ +++VYVDD+I+ G+D+ EI +K +L+ +F IKDLG L
Sbjct: 33 GYIQSAHDHSLFTKF-RDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQFRIKDLGTL 209
Query: 1166 KYFLGMEFARSKEGIFLNQRKY 1187
KYFLG+E ARS G+FL+QRKY
Sbjct: 210 KYFLGLEVARSSCGLFLSQRKY 275
>BP063694
Length = 511
Score = 91.7 bits (226), Expect = 8e-19
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Frame = -2
Query: 407 LFCRSTCVFQDQNSGKTIGTAREINGLYYFDETPLGNTAMFGSSRTSPPLVSNKIMLWHK 466
+F + V Q++ +G +G R GLY ++ + A+ TS PL LWH
Sbjct: 510 IFLDDSFVIQNRKTGAVLGRXRCDQGLYVLNQD---SQALL---TTSSPLPRASFELWHS 349
Query: 467 RLGHPSFSYLKHLFPEFSKEISS---SQFHCDACHLAKDHRVSFNSRGYSASKPFYLIHS 523
RLGH +F +K L ++SS C +C +AK R+ F+ AS LIH
Sbjct: 348 RLGHVNFDIIKQLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHC 169
Query: 524 DVWGPSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSEVEQRFQDFFNMIKNQF 577
D+ GPS + ++ +FV F+DD +R W Y +++KS+ F ++N+F
Sbjct: 168 DLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRF 7
>BP084332
Length = 368
Score = 90.5 bits (223), Expect = 2e-18
Identities = 42/107 (39%), Positives = 71/107 (66%)
Frame = +2
Query: 1328 QNVVARSSAEAEFRSVAHGFCEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLH 1387
Q+ +A S+AEAE+ S A ++LW+K +++ +I + + +YCDN AAIS++ NP+LH
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQIL-ESNIPIYCDNTAAISLSKNPILH 208
Query: 1388 DRTKHVEVDKHFIKEKIDSGEICMSYIPTKSQVADVLTKSLPKRQFD 1434
R KH+EV HFI++ + G + + ++ T Q AD+ TK L + +F+
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFN 349
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 82.0 bits (201), Expect = 6e-16
Identities = 47/147 (31%), Positives = 74/147 (49%), Gaps = 8/147 (5%)
Frame = +2
Query: 1098 FGSVVKGHGFTQSQADHTMFFKHSREGKIAILIVYVDDIIMTGDDIGEISDLKRRLEAEF 1157
F S + G+ + +DH + K + IL++YVDD+++ G + + +LK +L EF
Sbjct: 2 FDSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 181
Query: 1158 DIKDLGKLKYFLGMEFARSKEG--IFLNQRKYILDLLTETGMTGCKAAETPMDPNVKL-- 1213
D+KDLG LGM+ R ++ I+L+Q+ Y+ +L M C TP+ N KL
Sbjct: 182 DMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSS 361
Query: 1214 ----KSVAEDEIIDRERYQRLAGRLIY 1236
S AE + R Y G L+Y
Sbjct: 362 SMIPSSEAERMEMSRVPYASAVGSLMY 442
>AV766665
Length = 601
Score = 82.0 bits (201), Expect = 6e-16
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = +3
Query: 1268 RILRYLKGTPGKGLMFRNRGHIQVEAYTDADWAGNINDRRSTSGYCTFVGGNLVTWRSKK 1327
RI YLK +G +F+ G ++ +T AD+ G+I DR ST GY F+ GNLVTWRSK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 1328 QNVVARSSAEAEFRS 1342
QN++ARSS EAE R+
Sbjct: 552 QNIIARSSGEAELRA 596
Score = 33.9 bits (76), Expect(2) = 4e-04
Identities = 21/56 (37%), Positives = 31/56 (54%)
Frame = +1
Query: 1129 LIVYVDDIIMTGDDIGEISDLKRRLEAEFDIKDLGKLKYFLGMEFARSKEGIFLNQ 1184
L VYVD + + GDD E L+ +L +FD+K KLKY +E IF+++
Sbjct: 115 LCVYVDHMTIVGDDEVEKQILREKLAPQFDLK---KLKYISVIEVVYP**NIFISK 273
Score = 28.1 bits (61), Expect(2) = 4e-04
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 1109 QSQADHTMFFKHSREGKIAILIVYV 1133
Q+Q + KH+ +GK+ +L++YV
Sbjct: 47 QNQGGRILLIKHAHKGKLTLLLIYV 121
>BP054351
Length = 431
Score = 80.9 bits (198), Expect = 1e-15
Identities = 38/81 (46%), Positives = 53/81 (64%)
Frame = -1
Query: 417 DQNSGKTIGTAREINGLYYFDETPLGNTAMFGSSRTSPPLVSNKIMLWHKRLGHPSFSYL 476
D+ SGK I +A+ +GLYYF++T N A G S V ++IMLWH RLGHP+F YL
Sbjct: 245 DRISGKMIASAKMKDGLYYFEDT-FRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQYL 69
Query: 477 KHLFPEFSKEISSSQFHCDAC 497
+HLFP+ K ++ S C++C
Sbjct: 68 RHLFPDLFKNVNCSSLECESC 6
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 79.0 bits (193), Expect = 5e-15
Identities = 35/82 (42%), Positives = 52/82 (62%)
Frame = +1
Query: 1352 WIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKIDSGEICM 1411
W+ +Q+LK+ P VYCDN +A IA NPV H+RTKH+E+D H ++E+I G I +
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1412 SYIPTKSQVADVLTKSLPKRQF 1433
I + +AD+ TK+L + F
Sbjct: 184 LPISSSEPLADIYTKALSPQNF 249
>BP043850
Length = 515
Score = 76.3 bits (186), Expect = 3e-14
Identities = 33/84 (39%), Positives = 54/84 (64%)
Frame = -1
Query: 1349 EVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKIDSGE 1408
E++W++ + EL P ++ DN +AI IA NPV H+ T+H+EVD H ++E D
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1409 ICMSYIPTKSQVADVLTKSLPKRQ 1432
I + ++ T Q+AD+LTKSL +++
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQR 261
>BP057233
Length = 473
Score = 75.5 bits (184), Expect = 6e-14
Identities = 32/74 (43%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = -2
Query: 1365 PTPMK--VYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKIDSGEICMSYIPTKSQVAD 1422
P P K ++CDN +A ++A NPVLH R+KH+E+D H+I++++ E+ ++Y+PT Q+AD
Sbjct: 466 PMPRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIAD 287
Query: 1423 VLTKSLPKRQFDDM 1436
LTK L +F +
Sbjct: 286 CLTKPLSHTRFSQL 245
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 73.2 bits (178), Expect = 3e-13
Identities = 31/81 (38%), Positives = 54/81 (66%)
Frame = +3
Query: 1348 CEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKIDSG 1407
CE LW+ + +L+IA + +YCDN++A+ +A N V H RT+++E+D H + K+ G
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 1408 EICMSYIPTKSQVADVLTKSL 1428
+ + ++P+ QVADV TK++
Sbjct: 198 ILHLLHVPSSDQVADVFTKTI 260
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 71.6 bits (174), Expect = 8e-13
Identities = 32/89 (35%), Positives = 55/89 (60%)
Frame = +1
Query: 1348 CEVLWIKKFMQELKIAGPTPMKVYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKIDSG 1407
CE+ W+ +Q+L++ +P +YCD+++A IA N V H+RTKH+++D H ++EK+ +
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1408 EICMSYIPTKSQVADVLTKSLPKRQFDDM 1436
+ I + Q AD+LTK L F +
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHL 267
>BP054557
Length = 538
Score = 69.3 bits (168), Expect = 4e-12
Identities = 57/192 (29%), Positives = 85/192 (43%), Gaps = 18/192 (9%)
Frame = -2
Query: 327 IIDSGASEHMTNCSHLFSSY---------FPSSGSEKVKIADGSYSSIAGKGNIKISEQI 377
++D+GA+ H+ + +F + P+ E +AD Y SE+
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVY----------FSEKF 388
Query: 378 TLQSVLHVPKFACNLLSVHKLSEDSNCSVLFCRSTCVFQDQNSGKTIGTAREINGLYYFD 437
L VL+VP F NL+SV L + NC ++ C+ Q++ + KTIG A E GLY
Sbjct: 387 FLAXVLYVPSFNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAVI 208
Query: 438 ETPL--GNTAMFGSSRTSPP---LVSNKIMLWHKRLGHPSFSYLKHLFPEF----SKEIS 488
+ + + G+ +T LWH RLGH S L L F K+I+
Sbjct: 207 DPAVKAKHPPAEGNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKQIT 28
Query: 489 SSQFHCDACHLA 500
S CD CH+A
Sbjct: 27 SP---CDTCHMA 1
>AV766088
Length = 501
Score = 67.4 bits (163), Expect = 2e-11
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = -3
Query: 463 LWHKRLGHPSFSYLKHLFPE--FSKEISSSQFHCDACHLAKDHRVSFNSRGYSASKPFYL 520
LWH RLGHPS S L++L S E+ + C++C K R+ F S PF +
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMPFDI 128
Query: 521 IHSDVWGPSKIKTLSRKKWFVTFIDDHTRVCWVYLMEKKSEV 562
+HSD+W S + + + +++V F+DD T W + + KS+V
Sbjct: 127 LHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQV 5
>BP053302
Length = 432
Score = 62.0 bits (149), Expect = 6e-10
Identities = 37/79 (46%), Positives = 47/79 (58%), Gaps = 7/79 (8%)
Frame = -1
Query: 417 DQNSGKTIGTAREINGLYYFD---ETPLGNTAMFGSSRTSPPLVSNK--IMLWHKRLGHP 471
D NSGK IG A+E GLYY D +PL + + L +N +MLWH RLGHP
Sbjct: 243 DLNSGKMIGRAKESGGLYYLDLGSASPLPPKTISSCFESFFVLNNNDDHVMLWHLRLGHP 64
Query: 472 SFSYLKHLFPE--FSKEIS 488
SF YLK LFP+ ++K +S
Sbjct: 63 SFHYLKPLFPKLFYNKNLS 7
>AV427921
Length = 284
Score = 59.7 bits (143), Expect = 3e-09
Identities = 30/95 (31%), Positives = 51/95 (53%)
Frame = +1
Query: 609 QSTCRDTPQQNGIAERKNRHLLEVTRAIMFSMNVPKYLWGNALLTACHLINRMPSRVLQY 668
Q T TPQQNG++ERKNR +L + R+++ +PK A++ + H++NR P+ V+Q
Sbjct: 4 Q*TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQN 183
Query: 669 ETPVQVLQNNFPTSRIITNIPLKVFGCLCYVYIPN 703
P + P ++ CL Y ++P+
Sbjct: 184 MMPEEAWSGRQPAVD-----HFRISRCLAYAHVPD 273
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,351,543
Number of Sequences: 28460
Number of extensions: 391605
Number of successful extensions: 2181
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of query: 1436
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1334
effective length of database: 1,994,680
effective search space: 2660903120
effective search space used: 2660903120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135396.1