TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135320.7 + phase: 0 
         (190 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13161                                                               204  6e-54
TC13414 homologue to UP|Q84TL5 (Q84TL5) At1g75760, partial (39%)       26  5.0
TC9018 weakly similar to AAQ65175 (AAQ65175) At5g62590, partial ...    25  6.5
AV779434                                                               25  6.5
TC20238 homologue to UP|O22427 (O22427) Reversibly glycosylated ...    25  6.5
TC12092                                                                25  8.5

>TC13161 
          Length = 428

 Score =  204 bits (520), Expect = 6e-54
 Identities = 99/128 (77%), Positives = 111/128 (86%)
 Frame = +2

Query: 17  IDLTQITLRPLNLSDLDDLMIWTTDEKVAKFCSWELYTSKDDGINFIENIATKFLWCKAI 76
           I  TQI+LRPL+LSDLDD+M+WTTDEKV KFC+WE YTSK+DGINFIENIATKFLWCKAI
Sbjct: 44  ISTTQISLRPLHLSDLDDVMVWTTDEKVPKFCTWETYTSKEDGINFIENIATKFLWCKAI 223

Query: 77  CINDRAIGCVSLSSSSPGDKSRNKCAELGYVLGSKYWGKGVATCVVKQVVKVAFCELSYL 136
           C++DRA+G V LSS +  DK R K AELGYVLGSKYWGKG+AT VVKQVVK  F EL +L
Sbjct: 224 CLDDRAVGFVHLSSYAEHDKCRIKSAELGYVLGSKYWGKGIATYVVKQVVKDVFSELPHL 403

Query: 137 ERLEALVD 144
           ERLEALVD
Sbjct: 404 ERLEALVD 427


>TC13414 homologue to UP|Q84TL5 (Q84TL5) At1g75760, partial (39%)
          Length = 544

 Score = 25.8 bits (55), Expect = 5.0
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 32  LDDLMIWTTDEKVAKFCSWELYTSKDDGINFIENIATKFL--WC 73
           +D  ++W   +K++K  SW ++ +     +  +N+   FL  WC
Sbjct: 194 MDCGLLWYFYQKLSKLSSWLIFATTTSRASLADNLL*GFLQEWC 325


>TC9018 weakly similar to AAQ65175 (AAQ65175) At5g62590, partial (13%)
          Length = 771

 Score = 25.4 bits (54), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +3

Query: 76  ICINDRAIGCVSLSSSSPGDKSRN 99
           IC + RA GC+    SS G+ SR+
Sbjct: 303 ICSH*RACGCLPAQQSSSGNSSRS 374


>AV779434 
          Length = 544

 Score = 25.4 bits (54), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 108 LGSKYWGKGVATCVVKQVVKVAFCELSYLERLEALVDVENAGSQRVL 154
           L +KY G  +AT ++KQ++       S LE LE  + +   G  RV+
Sbjct: 327 LRAKYQGFQIATGIMKQIISHLPRIQSSLEFLEVAIGLHANGIIRVM 187


>TC20238 homologue to UP|O22427 (O22427) Reversibly glycosylated
           polypeptide-1, partial (43%)
          Length = 466

 Score = 25.4 bits (54), Expect = 6.5
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
 Frame = -2

Query: 35  LMIWTTDEKVAKFCSWELYTSKDD---------GINFIENI-------ATKFLWCKAICI 78
           +++W  + +  + CSW  +T  +           I FI+ +       A K L+    CI
Sbjct: 384 IIVWDVEPQTMRSCSWHTFTETEGVPANKICTFAIRFIQGVEKVRCGWAEKVLYMLLQCI 205

Query: 79  N 79
           N
Sbjct: 204 N 202


>TC12092 
          Length = 286

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = +2

Query: 73  CKAICINDRAIGCVSLSS 90
           C+ ICI   AIGCVS+ +
Sbjct: 104 CRNICIFFTAIGCVSIGN 157


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,211,224
Number of Sequences: 28460
Number of extensions: 43230
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of query: 190
length of database: 4,897,600
effective HSP length: 85
effective length of query: 105
effective length of database: 2,478,500
effective search space: 260242500
effective search space used: 260242500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)