TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135320.11 + phase: 0 
         (165 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV765027                                                              105  3e-24
TC16476 similar to UP|Q9LJ93 (Q9LJ93) Emb|CAB10262.1, partial (10%)    99  3e-22
BP055206                                                               30  0.16
BP031810                                                               28  0.61
BI419221                                                               27  1.4
TC12321 similar to UP|Q15415 (Q15415) YRRM2, partial (5%)              27  1.8
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II  ...    27  2.3
TC14496                                                                25  5.2
AU240137                                                               25  5.2
TC9286 similar to UP|O65009 (O65009) BURP domain containing prot...    25  6.8
AV778667                                                               25  6.8
AV766663                                                               25  6.8
TC18850 similar to UP|Q41414 (Q41414) Epoxide hydrolase  , parti...    25  8.8
TC14497                                                                25  8.8

>AV765027 
          Length = 491

 Score =  105 bits (263), Expect = 3e-24
 Identities = 55/91 (60%), Positives = 64/91 (69%), Gaps = 3/91 (3%)
 Frame = -2

Query: 78  LGHVETHTLHIHPGVTKIVVRASHSLHFSLDDLHPDIWRFRLPESVVPELATAVFVDGEL 137
           +G V  HT+ IHPGVTKIVVR   S+  SLD L  D+WRFRLPES  PELA+A+FVDGEL
Sbjct: 478 IGEVRAHTVEIHPGVTKIVVRDGGSVELSLDHLELDMWRFRLPESTQPELASAIFVDGEL 299

Query: 138 IVTVPK---AFDDENTPEPIGGGGATLVFVQ 165
           IVTVPK     D+  +   +GGGG  LV VQ
Sbjct: 298 IVTVPKLQNIEDNGGSDRGMGGGGGRLVLVQ 206


>TC16476 similar to UP|Q9LJ93 (Q9LJ93) Emb|CAB10262.1, partial (10%)
          Length = 1144

 Score = 99.4 bits (246), Expect = 3e-22
 Identities = 63/158 (39%), Positives = 85/158 (52%), Gaps = 16/158 (10%)
 Frame = +1

Query: 3   CNRKWNISIAYNMMNPL----SQAETLLSMSGFSNNNNKLRRLPHVFSRILQLPLRSDAD 58
           CN + +   A  ++NP     SQ   + S    + ++ KL RLPHVF+R L+LP  SDAD
Sbjct: 97  CNTQSHTMFAEKVINPFAKKRSQHAVVSSAVVPNTSSKKLWRLPHVFARTLELPFPSDAD 276

Query: 59  VSIEEEPTCFRFVA-----ETDSSLGHVETHTLHIHPGVTKIVVRASHSLHFSLDD---- 109
           VSI+E    FRFVA     +T S    V  H + I PG+TKIV+R       ++      
Sbjct: 277 VSIDETKQFFRFVASCGGGKTSSMFDGVRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQ 456

Query: 110 ---LHPDIWRFRLPESVVPELATAVFVDGELIVTVPKA 144
                 D+WR+RLP    PE  TAV   G+L+VTVPK+
Sbjct: 457 QPRFGADLWRYRLPPWTQPEKVTAVCTGGKLVVTVPKS 570


>BP055206 
          Length = 586

 Score = 30.4 bits (67), Expect = 0.16
 Identities = 13/15 (86%), Positives = 14/15 (92%)
 Frame = +1

Query: 37  KLRRLPHVFSRILQL 51
           KLRRLPHV SR+LQL
Sbjct: 331 KLRRLPHVLSRVLQL 375


>BP031810 
          Length = 393

 Score = 28.5 bits (62), Expect = 0.61
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 103 LHFSLDDLHPDIWRFRLPESVVPELATAVFVDGELIVTVPKAFDDENTPE 152
           ++++ + LHP  WR  L  + VP  AT +F+ G L    P +  ++   E
Sbjct: 33  VNYATEQLHPWGWRLSLGLATVP--ATVMFIGGLLCPETPNSLVEQGRLE 176


>BI419221 
          Length = 399

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 16/56 (28%), Positives = 26/56 (45%)
 Frame = +1

Query: 65  PTCFRFVAETDSSLGHVETHTLHIHPGVTKIVVRASHSLHFSLDDLHPDIWRFRLP 120
           P+CF  + ET S L     H+L     +   + +  H++  S + LHP  +  R P
Sbjct: 16  PSCFDELEETPSLLS*QYIHSLFETFSIHSFIFQFPHNVSPSSNSLHPFFFLHRPP 183


>TC12321 similar to UP|Q15415 (Q15415) YRRM2, partial (5%)
          Length = 812

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = +1

Query: 31  FSNNNNKLRRLPHVFSRILQLPLRSDADVSIEEEPTCFRFVAETDSSLGHVETHTLHIHP 90
           F  N N L   P + ++   LP  S    S+   P  F F++   SSL    T  L ++ 
Sbjct: 193 FPRNLNSLS--PIIINKQNPLPF-STPSPSLSPPPKSFHFISPFFSSLTQPFTFPLTLYF 363

Query: 91  GVTKIVVRASHSLHFSLDDLH 111
             T    + +HSL FSL  LH
Sbjct: 364 F*T*---KCNHSLPFSLSSLH 417


>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II  , partial
           (6%)
          Length = 583

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 24/87 (27%), Positives = 36/87 (40%), Gaps = 22/87 (25%)
 Frame = -3

Query: 62  EEEPTCFRFVAETDSSLGHVETHT-----------LHIHPG--------VTKIVVRASHS 102
           ++ P C R  + T SS   + TH            L  HP         +  + V     
Sbjct: 392 DQTPFCKRARSRTPSSSALIATHVTISDGDLTANLLPKHPPSDTDPKPLILTLSVHNHGI 213

Query: 103 LHFSLDD---LHPDIWRFRLPESVVPE 126
           L  ++D+   L+P   RFR+P+ VVPE
Sbjct: 212 LRLTIDEDASLNPPKTRFRVPDVVVPE 132


>TC14496 
          Length = 598

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +1

Query: 45  FSRILQLPLRSDADVSIEEEP--TCFRFVAETDSSLGHVETHTLH--IHPGVTKIVVRAS 100
           FS ++Q    S   +++ + P  + F F AE  +SL    T TL   +H   T + + AS
Sbjct: 19  FSDLMQFG-SSSLSLNLRDLPPFSVFLFEAEEWTSLLETLTRTLSLDVHS*GTSMSLLAS 195

Query: 101 HSLH 104
           HSLH
Sbjct: 196 HSLH 207


>AU240137 
          Length = 420

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 34  NNNKLRRLPHVFSRILQLPLRSDADVS-IEEEPTCFRFVAE 73
           NN+KL     VFS+ L+   R++A+V+ +E     ++FV +
Sbjct: 147 NNSKLAFEKFVFSKTLKTNARTEAEVTLLENNIIIYKFVQD 269


>TC9286 similar to UP|O65009 (O65009) BURP domain containing protein,
           partial (6%)
          Length = 805

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 80  HVETHTLHIHPGVTKIVVRASHSLHFSLDDLH 111
           H+E+  +H++PG+  I++ + +  H  LD +H
Sbjct: 349 HIESDIVHLNPGLR*ILLGSCY--HIELDIVH 260


>AV778667 
          Length = 541

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 11/17 (64%), Positives = 12/17 (69%)
 Frame = -2

Query: 26  LSMSGFSNNNNKLRRLP 42
           LSMSGF N N K+ R P
Sbjct: 201 LSMSGFCNRNPKVSRKP 151


>AV766663 
          Length = 410

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 37  KLRRLPHVFSRILQLPLRSDADVSIEEEPTCFRFVA 72
           KLR    +F  + QLPL+ +  + +EE    F F++
Sbjct: 240 KLRGTEFLFFLLDQLPLKQNCQIQMEESGVPFFFLS 133


>TC18850 similar to UP|Q41414 (Q41414) Epoxide hydrolase  , partial (22%)
          Length = 474

 Score = 24.6 bits (52), Expect = 8.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 5   RKWNISIAYNMMNPLSQAETLLSMSGFSNN 34
           +KW+IS+   ++N + +A +++S    +NN
Sbjct: 117 QKWHISLESTLVNVILRAWSIISQVKITNN 28


>TC14497 
          Length = 874

 Score = 24.6 bits (52), Expect = 8.8
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 68  FRFVAETDSSLGHVETHTLH--IHPGVTKIVVRASHSLH 104
           F F AE  +SL    T TL   +H   T + + ASHSLH
Sbjct: 247 FLFEAEEWTSLLETLTRTLSLDVHS*GTSMSLLASHSLH 363


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,098,211
Number of Sequences: 28460
Number of extensions: 41120
Number of successful extensions: 239
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of query: 165
length of database: 4,897,600
effective HSP length: 83
effective length of query: 82
effective length of database: 2,535,420
effective search space: 207904440
effective search space used: 207904440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)