TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.8 - phase: 0 /pseudo
         (271 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB828260                                                               74  3e-14
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re...    43  5e-05
CN825057                                                               41  2e-04
AV425218                                                               37  0.005
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp...    36  0.008
AV776853                                                               33  0.051
TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%)        28  1.3
TC20144 similar to UP|ARC1_LYCES (Q42884) Chorismate synthase 1,...    28  1.7
AV771553                                                               28  2.2
AV406521                                                               28  2.2
AV780484                                                               27  2.8
TC8224 homologue to UP|IF52_MEDSA (Q945F4) Eukaryotic translatio...    27  4.8
TC16454 similar to UP|O81152 (O81152) 20S proteasome beta subuni...    26  6.3
CB827833                                                               26  6.3
TC11341                                                                26  6.3
TC10474                                                                26  8.2

>CB828260 
          Length = 557

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
 Frame = +3

Query: 4   LVCERSGEHKLPKTKVKHEATESRKCGCLFKVRGYVVRE--NNAWKLTILNGVHNHEMVR 61
           L CE+ G++   +     E T ++K  C F+++G  ++   +  W+L ++ G HNHE  R
Sbjct: 192 LGCEKHGKYVPYRDPDLVEGTRTQKTECPFRLKGRPMKNGTDRDWRLKVMEGAHNHEPAR 371

Query: 62  YVAGHLLAGRLMEDDKKIVHDLTDSLVKPKNILTNLKKKRKESITNIKQVYNERHKFKKT 121
            + GH   GRL  ++K+ V  ++ S V P+ +L  LK+    ++T I Q+Y    + +K+
Sbjct: 372 SLLGHNFVGRLNSEEKEQVEKMSKSWVLPRKMLLTLKENNPLNLTTISQIYGACKRLRKS 551

Query: 122 KR 123
            R
Sbjct: 552 LR 557


>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
           protein-like, partial (4%)
          Length = 660

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 23/75 (30%), Positives = 37/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 117 KFKKTKRGDLTE-MQYLISKLEENGYVHYVREKPESQTVQDIFWTHPTSVKLFNTFPTVL 175
           K ++ + GD    + YL  K + +    Y   K   ++++++FW    S   +N F  V+
Sbjct: 125 KRERIQNGDAAAALSYLEGKADNDPMFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVI 304

Query: 176 IMDSTYKTNLYRMPL 190
             DSTYK N Y  PL
Sbjct: 305 AFDSTYKKNKYNKPL 349


>CN825057 
          Length = 721

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 35/149 (23%), Positives = 69/149 (45%), Gaps = 7/149 (4%)
 Frame = +1

Query: 55  HNHEMVRYVAGHLLAGRLMEDDKKIVHDLTDSLVKPKNILTNLKKKRKESITNIKQVYNE 114
           HNHE++  +A H    R ++  +K   D+  ++ +    +     ++     NI+ +  +
Sbjct: 250 HNHELLPALAYHFRIHRNVKLAEKNNMDILHAVSERTRKMYVEMSRQSGGCLNIESLVGD 429

Query: 115 RH-KFKKTK-----RGDLTEM-QYLISKLEENGYVHYVREKPESQTVQDIFWTHPTSVKL 167
            + +FKK +      GD   M +Y     +EN    Y  +  E Q +++IFW    S+  
Sbjct: 430 LNDQFKKGQYLAMDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQRLRNIFWIDAKSIND 609

Query: 168 FNTFPTVLIMDSTYKTNLYRMPLFEIVGV 196
           + +F  V+  D++Y  +  ++P    VGV
Sbjct: 610 YLSFNDVVSFDTSYIKSNEKLPFAPFVGV 696


>AV425218 
          Length = 419

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = +2

Query: 189 PLFEIVGVTSTYLTYSVDFSFMTAEKEDNFTWALQMLLKLLEPNSDMPKVVVTNRDPSMM 248
           PL  +VGV     +     + +++E  ++F W  Q LL  +  +   P+ ++T+   +M 
Sbjct: 5   PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCM--SGVPPQGIITDHSEAMK 178

Query: 249 KAVTNALPDSSAILCYFHVGKNV 271
           KA+   LP +    C  ++ K +
Sbjct: 179 KAIETVLPSTRHRWCLSYIMKKL 247


>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
           {Oryza sativa (japonica cultivar-group);}, partial (8%)
          Length = 488

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 20/99 (20%), Positives = 41/99 (41%)
 Frame = +1

Query: 129 MQYLISKLEENGYVHYVREKPESQTVQDIFWTHPTSVKLFNTFPTVLIMDSTYKTNLYRM 188
           +QY   KL EN   ++  +  +   + ++FW     +  +  F  ++ +DSTY T+    
Sbjct: 58  LQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYCTHSSNR 237

Query: 189 PLFEIVGVTSTYLTYSVDFSFMTAEKEDNFTWALQMLLK 227
           PL    G            + +  E  +++ W  +  L+
Sbjct: 238 PLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFLE 354


>AV776853 
          Length = 625

 Score = 33.1 bits (74), Expect = 0.051
 Identities = 24/90 (26%), Positives = 37/90 (40%), Gaps = 4/90 (4%)
 Frame = +1

Query: 1   MLELVCERSG---EHKLPKTKVKHEATESRKCGCLFKVRGYVVRENNAWKLTILNGVHNH 57
           M + VC R G   +    +T  K +        CL K+R ++  +   WK+      HNH
Sbjct: 352 MRQFVCNRQGLRSKKHYNRTDRKRDHKPVTHTNCLAKLRVHLDYKIGKWKVVSFEECHNH 531

Query: 58  EMVRYVAGHLLAG-RLMEDDKKIVHDLTDS 86
           E+      H +   R+M D  K   D+  S
Sbjct: 532 ELTPARFVHFIPPYRVMNDADKAKGDMLHS 621


>TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%)
          Length = 555

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 193 IVGVTSTYLTYSVDFSFMTAEKEDNFTWALQMLLKLLEP 231
           I    +T  T SV F+ MT  +  N TW + +    L+P
Sbjct: 405 ITPAPTTASTSSVSFAMMTTRRSGNVTWGMTISSSWLDP 521


>TC20144 similar to UP|ARC1_LYCES (Q42884) Chorismate synthase 1,
           chloroplast precursor
           (5-enolpyruvylshikimate-3-phosphate phospholyase 1) ,
           partial (21%)
          Length = 466

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 218 FTWALQMLLKLLEPNSDMPKVVVTNRDPSMMKAVTNALPDSSAIL 262
           F W L +LL    P+S +P+  +    PS++ A+T   P S ++L
Sbjct: 73  FQWLLLLLLSPPTPSSPLPEPPIPLSPPSLLSALT---PPSISVL 198


>AV771553 
          Length = 454

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 29 CGCLFKVRGYVVRENNAWKLTILNGVHNHE 58
          CGC F + GY+ +EN   +   +  +H+ +
Sbjct: 33 CGCQFDIEGYIYKENITSRYKCIT*LHSRK 122


>AV406521 
          Length = 267

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 207 FSFMTAEKEDNFTWALQMLLKLLEPNSD-MPKVVVTNRDPSMMKAVTNALPDSSAI 261
           F  +  E +DN+TW    L K LE +++ MP++   +      + +T+AL  SS I
Sbjct: 7   FGVVDVENDDNWTWFRSELHKALEASTESMPQMGFLS---DGQRGITDALRTSSQI 165


>AV780484 
          Length = 529

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 13/62 (20%), Positives = 28/62 (44%)
 Frame = -1

Query: 130 QYLISKLEENGYVHYVREKPESQTVQDIFWTHPTSVKLFNTFPTVLIMDSTYKTNLYRMP 189
           +Y +S   EN    Y  +   ++ +  +FW        + T   ++++ + Y  N Y++P
Sbjct: 193 EYFVSTQGENPNFFYAIDLDLNRHLTSVFWVDIKGRLDYETSMMLVLIHTHYLKNKYKIP 14

Query: 190 LF 191
            F
Sbjct: 13  FF 8


>TC8224 homologue to UP|IF52_MEDSA (Q945F4) Eukaryotic translation
           initiation factor 5A-2 (eIF-5A 2), complete
          Length = 721

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 37  GYVVRENNAWKL----TILNGVHNHEMVRYVAGHLLAGRLMED 75
           GY+V +N   K+    T   G H H    +VA  +  G+ +ED
Sbjct: 117 GYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLED 245


>TC16454 similar to UP|O81152 (O81152) 20S proteasome beta subunit PBB1
           (20S proteasome beta subunit, multicatalytic
           endopeptidase) (At3g27430) , complete
          Length = 1277

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 158 FWTHPTSVKLFNTFPTVLIMDSTYKTNLYRMPLFEIVGVTSTYLTYSVDFSFMTAE 213
           FW    +       P + +M   Y TN+      +++  TSTY   +  +SF+ ++
Sbjct: 810 FWIDICARIWCEVIPEIFLMSLGYDTNINITSTSQVIKNTSTYCLNNYFYSFIPSQ 643


>CB827833 
          Length = 545

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 133 ISKLEENGYVHYVREKPESQTVQDIFWT 160
           I K  E G+++    +PES++ QDI +T
Sbjct: 542 IVKSSELGHIYMFYTRPESRSTQDILFT 459


>TC11341 
          Length = 340

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 98  KKKRKESITNIKQVYNERHKFKKTK 122
           KK + E I N +Q+Y + H FKK K
Sbjct: 251 KKIKLEQIWNRQQIYMK*HSFKKMK 177


>TC10474 
          Length = 446

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 117 KFKKTKRGDLTEMQYLISKLEENGY-VHYVREKPESQTVQDIFWTHPTSVKLFNTFPTVL 175
           +FK  +RG   E+    +K+E NG+  H++       T+Q     HPT     N  P +L
Sbjct: 310 RFKTMRRGSFMEIGVEWNKVEFNGHRRHFLCSSIHPLTLQ-----HPTKPNNNNKHPLIL 146


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,412,596
Number of Sequences: 28460
Number of extensions: 52261
Number of successful extensions: 297
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of query: 271
length of database: 4,897,600
effective HSP length: 89
effective length of query: 182
effective length of database: 2,364,660
effective search space: 430368120
effective search space used: 430368120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)