TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.3 + phase: 0 
         (41 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13537 similar to GB|AAP21222.1|30102608|BT006414 At3g06035 {Ar...    47  1e-06
BP047609                                                               25  2.6
TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment),...    25  3.5

>TC13537 similar to GB|AAP21222.1|30102608|BT006414 At3g06035 {Arabidopsis
           thaliana;} , partial (19%)
          Length = 765

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 24/39 (61%), Positives = 31/39 (78%), Gaps = 1/39 (2%)
 Frame = +2

Query: 1   MVLVLTTNTTTGTFSAATTSLHANF-VLMVLLLVVIINY 38
           MVLVLTTNT TGTF+A  ++LHA    L++ LLV++INY
Sbjct: 443 MVLVLTTNTPTGTFAAEASTLHAGVEFLLLALLVLLINY 559


>BP047609 
          Length = 548

 Score = 25.4 bits (54), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (60%)
 Frame = +2

Query: 5   LTTNTTTGTFSAATTSLHANFVLMVLLLVVIINYFS 40
           ++TN  +  FS+ T S+   F  + LLL+  +++FS
Sbjct: 386 VSTNL*SSFFSSITMSIIITFPSLPLLLIASLHFFS 493


>TC9795 homologue to UP|Q9ATB8 (Q9ATB8) BiP-isoform D (Fragment), partial
           (63%)
          Length = 981

 Score = 25.0 bits (53), Expect = 3.5
 Identities = 12/38 (31%), Positives = 23/38 (59%)
 Frame = -3

Query: 3   LVLTTNTTTGTFSAATTSLHANFVLMVLLLVVIINYFS 40
           LVL T ++ GTFS +      + VL  +L +++++ F+
Sbjct: 973 LVLATESSLGTFSLSPQLAKCSVVLANVLSMLLLDQFN 860


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.329    0.134    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,022
Number of Sequences: 28460
Number of extensions: 3527
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 41
length of database: 4,897,600
effective HSP length: 17
effective length of query: 24
effective length of database: 4,413,780
effective search space: 105930720
effective search space used: 105930720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)