BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135311.5 + phase: 0
(346 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV423934 137 2e-33
TC9444 similar to GB|AAP68276.1|31711840|BT008837 At3g61310 {Ara... 123 5e-29
TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding ... 117 3e-27
TC17051 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (37%) 106 5e-24
AV425818 105 1e-23
AV769791 88 2e-18
TC17986 similar to GB|AAP21231.1|30102626|BT006423 At4g14465 {Ar... 88 2e-18
TC16810 similar to UP|Q8VYJ2 (Q8VYJ2) AT4g12080/F16J13_150, part... 84 3e-17
TC10120 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-... 83 8e-17
TC19961 weakly similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-b... 74 3e-14
TC10946 weakly similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-b... 74 4e-14
TC15800 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/d... 72 1e-13
BP081200 67 4e-12
TC15228 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-... 57 6e-09
TC12629 49 9e-07
TC18947 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/d... 49 1e-06
TC15069 weakly similar to UP|HLX1_HUMAN (Q14774) Homeobox protei... 46 8e-06
AV424254 42 1e-04
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 34 0.041
TC12673 similar to UP|Q8VYJ2 (Q8VYJ2) AT4g12080/F16J13_150, part... 32 0.16
>AV423934
Length = 406
Score = 137 bits (346), Expect = 2e-33
Identities = 77/134 (57%), Positives = 94/134 (69%), Gaps = 5/134 (3%)
Frame = +3
Query: 89 KRKRGRPRKYG---ADRVVSLALSP--SPTPSSNPGTMTQGGPKRGRGRPPGSGKKQQLA 143
KRKRGRPRKY VSL LSP + T +S+PG+ T R RGRPPGSG+KQQLA
Sbjct: 6 KRKRGRPRKYAPADGQGQVSLRLSPMSAATANSSPGSTTPSQKGR-RGRPPGSGRKQQLA 182
Query: 144 SFGELMSGSAGTGFIPHVIEIASGEDIAAKILTFSQVRARALCVLSSSGSVSSVIIREPS 203
+ GE M+ SAG F PHVI IA+GEDI AK+L+FSQ R RALC+LS SG+VS V +R+P+
Sbjct: 183 ALGEWMNSSAGLAFSPHVITIAAGEDIVAKLLSFSQQRPRALCILSGSGTVSLVTLRQPA 362
Query: 204 ISGGTLKYEGHFHI 217
+ + YEG F I
Sbjct: 363 STSVGVTYEGRFEI 404
>TC9444 similar to GB|AAP68276.1|31711840|BT008837 At3g61310 {Arabidopsis
thaliana;}, partial (8%)
Length = 700
Score = 123 bits (308), Expect = 5e-29
Identities = 62/90 (68%), Positives = 70/90 (76%)
Frame = +1
Query: 257 GPLVAASPVQVMIGSFLWGRLKAKNKKKESSEDAEGTVESDHQGAHNPAALNSISPNQNL 316
G L+AAS VQV++GSF+WG K KNKK E SE AE ++ESDHQ HNP A+NSISPNQNL
Sbjct: 1 GVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSISPNQNL 180
Query: 317 TPTSSLSPWSAASRQMDMGNSHADIDLMRG 346
T SS SPW ASR +DM NSH DIDLMRG
Sbjct: 181 TAISSPSPW-PASRTLDMRNSHIDIDLMRG 267
>TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding protein,
partial (24%)
Length = 932
Score = 117 bits (293), Expect = 3e-27
Identities = 70/152 (46%), Positives = 88/152 (57%), Gaps = 20/152 (13%)
Frame = +1
Query: 87 TVKRKRGRPRKYGAD---------RVVSLALSPSPTPSSNPGTMTQGGPKRGRGRPPGSG 137
T K+KRGRPRKYG D + LSP P SS P T KRGRGRP S
Sbjct: 475 TEKKKRGRPRKYGPDGRAIPGAAAAAAATPLSPMPISSSIPLTGDFSAWKRGRGRPVESI 654
Query: 138 KKQQLASF-----------GELMSGSAGTGFIPHVIEIASGEDIAAKILTFSQVRARALC 186
KK F GE ++ S G F HV+ + SGEDI KI++FSQ ARA+C
Sbjct: 655 KKSFKLDFESPGPPAAPGPGEGIAYSIGGNFTAHVLTVNSGEDITMKIMSFSQQGARAIC 834
Query: 187 VLSSSGSVSSVIIREPSISGGTLKYEGHFHIM 218
+LS++G++S+V +R+PS SGGTL YEG F I+
Sbjct: 835 ILSATGTISNVTLRQPSSSGGTLTYEGRFEIL 930
>TC17051 similar to UP|Q9ZRR7 (Q9ZRR7) SAP1 protein, partial (37%)
Length = 611
Score = 106 bits (265), Expect = 5e-24
Identities = 63/155 (40%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Frame = +3
Query: 86 ETVKRKRGRPRKYGADRVV---------SLALSP---SPTPSSNPGTMTQGGPKRGRGRP 133
E KRKRGRPRKYG S + SP P P S+ T P
Sbjct: 180 EPAKRKRGRPRKYGTPEQALAAKKASTSSFSASPREKKPQPHSHSQAFTPSSPSY----- 344
Query: 134 PGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDIAAKILTFSQVRARALCVLSSSGS 193
S KK S G +AG F PHVI +A+GED+ KI+ F Q R +C+LS+SGS
Sbjct: 345 --SSKKSNSLSLG-----NAGLSFTPHVITVAAGEDVGQKIMLFMQQSRREVCILSASGS 503
Query: 194 VSSVIIREPSISGGTLKYEGHFHIMSMSGCYVPTE 228
+S+ +R+P+ SGG + YEG F I+S++G YV E
Sbjct: 504 ISNASLRQPASSGGNVTYEGRFEIISLTGSYVHNE 608
>AV425818
Length = 410
Score = 105 bits (262), Expect = 1e-23
Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 5/135 (3%)
Frame = +3
Query: 101 DRVVSLALSPSPTPSSNP--GTMTQGGPKRGRG-RPPGSGKKQ--QLASFGELMSGSAGT 155
D ++ LSP P SS P + KRG+ RP S K +L + GE ++ S G
Sbjct: 3 DGSATMPLSPKPISSSAPLPPVIDFSAEKRGKVVRPVSSVSKARFELENLGEWVACSVGG 182
Query: 156 GFIPHVIEIASGEDIAAKILTFSQVRARALCVLSSSGSVSSVIIREPSISGGTLKYEGHF 215
F PHVI + +GED+ K+++FSQ RA+C+LS++G +SSV +R+P SGGTL YEG F
Sbjct: 183 NFTPHVITVNTGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRF 362
Query: 216 HIMSMSGCYVPTENG 230
I+S+SG ++ +E+G
Sbjct: 363 EILSLSGSFMLSESG 407
>AV769791
Length = 585
Score = 87.8 bits (216), Expect = 2e-18
Identities = 58/136 (42%), Positives = 82/136 (59%), Gaps = 4/136 (2%)
Frame = -3
Query: 215 FHIMSMSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSFLW 274
F I+ +SG Y+ E+G NR GG+S+SL P+G + GGAV L+AAS VQV++ SF++
Sbjct: 583 FEILCLSGSYLVAEDGGPHNRTGGMSVSLSSPEGHVIGGAV-ARLIAASSVQVVVCSFVY 407
Query: 275 GRLKAKNKKKESSEDAEGTVESDHQGAHNPAALNSIS-PNQNLTPTSSLSPWSAASRQMD 333
G K K K+ S+ E +S+ Q + A+ S + PNQN T S+ W ASR +D
Sbjct: 406 GNSKPKTTKQGSATKDED--DSEPQSSDKLASPGSAAPPNQNYT-ASAAGIW-PASRPLD 239
Query: 334 MGNS---HADIDLMRG 346
M ++ H IDLMRG
Sbjct: 238 MQSAHQQHTGIDLMRG 191
>TC17986 similar to GB|AAP21231.1|30102626|BT006423 At4g14465 {Arabidopsis
thaliana;}, partial (49%)
Length = 628
Score = 87.8 bits (216), Expect = 2e-18
Identities = 46/129 (35%), Positives = 75/129 (57%)
Frame = +1
Query: 125 GPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDIAAKILTFSQVRARA 184
G +R RGRPPGS K + F ++ + HV+E+A G D+A + F++ R R
Sbjct: 259 GNRRQRGRPPGSKNKPKPPIF---VTRDSPNSLRSHVMEVAGGADVAESVAQFARRRQRG 429
Query: 185 LCVLSSSGSVSSVIIREPSISGGTLKYEGHFHIMSMSGCYVPTENGSSRNRDGGLSISLL 244
+CVLS SG+V++V +R+P+ G + G F I+S++G ++P G + GL++ L
Sbjct: 430 VCVLSGSGAVANVTLRQPAAPGAVVALHGRFEILSLTGAFLP---GPAPPGSTGLTVYLA 600
Query: 245 GPDGRLFGG 253
G G++ GG
Sbjct: 601 GGQGQVVGG 627
>TC16810 similar to UP|Q8VYJ2 (Q8VYJ2) AT4g12080/F16J13_150, partial (17%)
Length = 875
Score = 84.0 bits (206), Expect = 3e-17
Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Frame = +1
Query: 215 FHIMSMSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSFLW 274
F I+S+SG ++PT+NG +++R GG+S+SL GPDGR+ GG + G L+AA PVQV++GSFL
Sbjct: 19 FEILSLSGSFMPTDNGITKSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLP 198
Query: 275 G---RLKAKNKKKESSEDAEGTVESDH 298
G KAK + E T + H
Sbjct: 199 GHHLEHKAKKHRVEHVSTIPTTTHAPH 279
>TC10120 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (40%)
Length = 847
Score = 82.8 bits (203), Expect = 8e-17
Identities = 43/113 (38%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +3
Query: 161 VIEIASGEDIAAKILTFSQVRARALCVLSSSGSVSSVIIREPSIS-GGTLKYEGHFHIMS 219
++E+A G D+ I FS+ + L +L+ SG+V++V +R+PS + G T+ + G F I+S
Sbjct: 3 ILEVAGGNDVVQAIALFSRRKNMGLSILTGSGTVANVTLRQPSTTPGATVTFHGRFDILS 182
Query: 220 MSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSF 272
++ ++P + + GG SISL GP G++ GG V G L+AA V V+ SF
Sbjct: 183 INATFLPQQQPAL---SGGFSISLAGPQGQIVGGIVAGGLMAAGTVFVVAASF 332
>TC19961 weakly similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding
protein, partial (16%)
Length = 615
Score = 74.3 bits (181), Expect = 3e-14
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Frame = +3
Query: 161 VIEIASGEDIAAKILTFSQVRARALCVLSSSGSVSSVIIREPSISGGTLKYEGHFHIMSM 220
+I I SGE+ +I+ FSQ R +C+LS+ G +S+V + +P S T+ +EG F I+S+
Sbjct: 3 LITINSGENXFREIMVFSQPTPRDICILSAVGHISTVTLNQPGSSARTVTHEGQFRILSL 182
Query: 221 SGCYVPTEN-GSSRNRDGGLSISLLGPDGRL----FGGAVGGPLVAASPVQVMIGSFL 273
SG + P E+ G + R G +SI PDGR+ VGG S + ++GSF+
Sbjct: 183 SGHFCPHESGGETLGRSGNMSIVFASPDGRVARWYISWYVGG---CNSRAR*LVGSFV 347
>TC10946 weakly similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding
protein, partial (11%)
Length = 537
Score = 73.9 bits (180), Expect = 4e-14
Identities = 52/149 (34%), Positives = 76/149 (50%), Gaps = 3/149 (2%)
Frame = -2
Query: 24 GSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTTLPLESSAISSQGVNMSGHTGVP 83
G+ A HV+P + ++P ++ G + +G+ + S G+++
Sbjct: 395 GAEAPSAYHVAPRSEAPNQVHVPAPASAGTAAAIVGSPV--------SVGLDV------- 261
Query: 84 SGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRG--RGRPPGSGKKQQ 141
T+K+KRGRPRKYG D VS+ALSP P SS P + KRG RG KK
Sbjct: 260 ---TIKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSNDYSSGKRGKPRGMEYKQSKKIG 90
Query: 142 L-ASFGELMSGSAGTGFIPHVIEIASGED 169
L G+L + S GT F+PH+I + +GED
Sbjct: 89 LDHHLGDLNACSDGTSFMPHIITVNAGED 3
>TC15800 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
{Arabidopsis thaliana;}, partial (39%)
Length = 818
Score = 72.0 bits (175), Expect = 1e-13
Identities = 39/122 (31%), Positives = 71/122 (57%), Gaps = 7/122 (5%)
Frame = +1
Query: 112 PTPSSNPGTMTQGGPKRG-------RGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEI 164
P +S+P + + GP+ G RGRP GS KQ+ +++ + H++E+
Sbjct: 424 PNHNSDPFS-AEDGPRSGDLVGRRPRGRPLGSKNKQKPPV---IITRESANTLRAHILEV 591
Query: 165 ASGEDIAAKILTFSQVRARALCVLSSSGSVSSVIIREPSISGGTLKYEGHFHIMSMSGCY 224
+G D+ + T+++ R R +CVLS SG+V++V +R+P+ +G + G F I+S+SG +
Sbjct: 592 GNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSLRQPASAGSVVSLHGRFEILSLSGSF 771
Query: 225 VP 226
+P
Sbjct: 772 LP 777
>BP081200
Length = 427
Score = 67.0 bits (162), Expect = 4e-12
Identities = 35/105 (33%), Positives = 61/105 (57%)
Frame = +1
Query: 115 SSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDIAAKI 174
S+ PG + +R RGRPPGS K + +++ + H++E+ASG D+ +
Sbjct: 130 SAGPGDVVG---RRPRGRPPGSKNKPKPPV---IITRESANTLRAHILEVASGSDVFDCV 291
Query: 175 LTFSQVRARALCVLSSSGSVSSVIIREPSISGGTLKYEGHFHIMS 219
+++ R R +CVLS SG+V++V +R+P+ +G + G F I+S
Sbjct: 292 TAYARRRQRGICVLSGSGTVTNVSLRQPASAGAVVTLHGRFEILS 426
>TC15228 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (32%)
Length = 543
Score = 56.6 bits (135), Expect = 6e-09
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 199 IREP-SISGGTLKYEGHFHIMSMSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGG 257
+R+P +I + + G F I+S+S ++P G+S G SISL GP G++ GG V G
Sbjct: 1 LRQPGAIPSAAVTFHGRFDILSVSATFLPHPPGTSPPLPNGFSISLAGPQGQIIGGHVAG 180
Query: 258 PLVAASPVQVMIGSF 272
LVAA V V+ SF
Sbjct: 181 RLVAAGTVFVIATSF 225
>TC12629
Length = 511
Score = 49.3 bits (116), Expect = 9e-07
Identities = 28/87 (32%), Positives = 44/87 (50%)
Frame = +2
Query: 213 GHFHIMSMSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSF 272
G F I+S+SG ++P+ + GL++ L G G++ GGAV G LVA+ PV V+ +F
Sbjct: 26 GRFEILSLSGAFLPSPSPPGAT---GLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATF 196
Query: 273 LWGRLKAKNKKKESSEDAEGTVESDHQ 299
+ + E + E V Q
Sbjct: 197 ANATFERLPLEPEEQGEEEMQVRQQQQ 277
>TC18947 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
{Arabidopsis thaliana;}, partial (25%)
Length = 435
Score = 48.9 bits (115), Expect = 1e-06
Identities = 26/83 (31%), Positives = 47/83 (56%)
Frame = +3
Query: 113 TPSSNPGTMTQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDIAA 172
T + PG + +R RGRPPGS K + +++ + H++E++SG D+
Sbjct: 204 TQNQGPGDVVG---RRPRGRPPGSKNKPKPPV---IITRESANTLRAHILEVSSGCDVFD 365
Query: 173 KILTFSQVRARALCVLSSSGSVS 195
+ T+++ R + +CVLS SG+V+
Sbjct: 366 SVATYARKRQKGICVLSGSGTVT 434
>TC15069 weakly similar to UP|HLX1_HUMAN (Q14774) Homeobox protein HLX1
(Homeobox protein HB24), partial (4%)
Length = 806
Score = 46.2 bits (108), Expect = 8e-06
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +2
Query: 215 FHIMSMSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSF 272
F I+S+SG ++P + + GL+I L G G++ GG+V GPL+A+ PV +M SF
Sbjct: 2 FEILSLSGSFLPPPAPPAAS---GLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASF 166
>AV424254
Length = 416
Score = 42.4 bits (98), Expect = 1e-04
Identities = 28/98 (28%), Positives = 42/98 (42%)
Frame = +1
Query: 73 GVNMSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTMTQGGPKRGRGR 132
G + G P+ K+KRGRPRKY + A + +S + +
Sbjct: 157 GNSDDGSHSQPNSAPEKKKRGRPRKYQSPEEALAARKAAAAAASAAAAASSY-------Q 315
Query: 133 PPGSGKKQQLASFGELMSGSAGTGFIPHVIEIASGEDI 170
PP KK + G +AG F PH++ +A GED+
Sbjct: 316 PPIHTKKPRSFDLG-----NAGQSFTPHIVPVADGEDV 414
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 33.9 bits (76), Expect = 0.041
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Frame = +3
Query: 23 PGSGAQPELHVSPSFNQLSNPNLPFQSNIGGGGSNIGTTLPLESSAISSQGVNMSGHTGV 82
P +G P SPS + +S P P S G S P S +S + +
Sbjct: 684 PSAGTPPSASTSPSPSPVSAP--PAASPAPGAES------PSSSPTSNSPAGGPTATSPS 839
Query: 83 PSGETVKRKRGRPRKYGADRVVSLA---LSPSPTPSSNPGTMTQGGPKRGRGRPPGSG 137
P+G++ P D S + +SPS TPSS P PPG+G
Sbjct: 840 PAGDSPAGGPPAPSPTTGDTPPSASGPDVSPSGTPSSLPADTPSSSSNNSTAPPPGNG 1013
>TC12673 similar to UP|Q8VYJ2 (Q8VYJ2) AT4g12080/F16J13_150, partial (5%)
Length = 497
Score = 32.0 bits (71), Expect = 0.16
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = +3
Query: 85 GETVKRKRGRPRKYGAD 101
G VK+KRGRPRKYG D
Sbjct: 444 GGVVKKKRGRPRKYGPD 494
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,705,602
Number of Sequences: 28460
Number of extensions: 81570
Number of successful extensions: 587
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of query: 346
length of database: 4,897,600
effective HSP length: 91
effective length of query: 255
effective length of database: 2,307,740
effective search space: 588473700
effective search space used: 588473700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC135311.5