TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135311.3 - phase: 1 /pseudo
         (84 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7847 homologue to UP|SUSY_SOYBN (P13708) Sucrose synthase  (Su...   124  4e-30
TC7848 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform ...   112  1e-26
TC18457 similar to UP|SUS2_PEA (O24301) Sucrose synthase 2  (Suc...    90  8e-20
TC18156                                                                24  4.3
TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, parti...    23  7.3

>TC7847 homologue to UP|SUSY_SOYBN (P13708) Sucrose synthase  (Sucrose-UDP
           glucosyltransferase) (Nodulin-100) , complete
          Length = 2797

 Score =  124 bits (310), Expect = 4e-30
 Identities = 64/80 (80%), Positives = 67/80 (83%), Gaps = 5/80 (6%)
 Frame = +1

Query: 1   IVLPPWVALAVRLMPGI*EYLRVNVHALVVENLQPAEFLKFKEELVDGSANVNYVLELDF 60
           IVLPPWVALAVR  PG+ EYLRVNVHALVVE LQPAEFL FKEELVDGS+N N+VLELDF
Sbjct: 313 IVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQPAEFLHFKEELVDGSSNGNFVLELDF 492

Query: 61  EPFTASFPRP-----IGGGV 75
           EPF ASFPRP     IG GV
Sbjct: 493 EPFNASFPRPTLNKSIGNGV 552


>TC7848 homologue to UP|Q9AVR8 (Q9AVR8) Sucrose synthase isoform 3  ,
           complete
          Length = 2779

 Score =  112 bits (280), Expect = 1e-26
 Identities = 57/80 (71%), Positives = 68/80 (84%), Gaps = 5/80 (6%)
 Frame = +1

Query: 1   IVLPPWVALAVRLMPGI*EYLRVNVHALVVENLQPAEFLKFKEELVDGSANVNYVLELDF 60
           IVLPP+VALAVR  PG+ EYLRV+V+++VV+ L+PAE+LKFKEELVDGS+N N+VLELDF
Sbjct: 307 IVLPPFVALAVRPRPGVWEYLRVDVYSIVVDELRPAEYLKFKEELVDGSSNGNFVLELDF 486

Query: 61  EPFTASFPRP-----IGGGV 75
           EPF ASFPRP     IG GV
Sbjct: 487 EPFNASFPRPTLNKSIGNGV 546


>TC18457 similar to UP|SUS2_PEA (O24301) Sucrose synthase 2  (Sucrose-UDP
           glucosyltransferase 2) , partial (28%)
          Length = 689

 Score = 89.7 bits (221), Expect = 8e-20
 Identities = 49/80 (61%), Positives = 56/80 (69%), Gaps = 5/80 (6%)
 Frame = +3

Query: 1   IVLPPWVALAVRLMPGI*EYLRVNVHALVVENLQPAEFLKFKEELVDGSANVNYVLELDF 60
           IVLPP+VA+AVR  PG+ EY+RVNV  L VE L  AE+L FKEELVDG  N N+VLELDF
Sbjct: 66  IVLPPFVAIAVRPRPGVWEYVRVNVFELSVEQLSVAEYLSFKEELVDGKVNDNFVLELDF 245

Query: 61  EPFTASFPRP-----IGGGV 75
           E F A+   P     IG GV
Sbjct: 246 ESFNATLTCPTRSSSIGNGV 305


>TC18156 
          Length = 531

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 46  VDGSANVNYVLELDFEPFTASFPRPIG 72
           V G  N+ + + L+  PF  + PRP G
Sbjct: 257 VGGEENMVFKMSLNHPPFVLTGPRPSG 177


>TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (28%)
          Length = 695

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 13/44 (29%), Positives = 19/44 (42%)
 Frame = -3

Query: 29  VVENLQPAEFLKFKEELVDGSANVNYVLELDFEPFTASFPRPIG 72
           ++  +   EF  F   LV    + ++   LDF  FT  FP   G
Sbjct: 531 IIRQVPNKEFSLFWWFLVISFFSFSFFSTLDFSVFTVGFPTRFG 400


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.148    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,182,100
Number of Sequences: 28460
Number of extensions: 9986
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of query: 84
length of database: 4,897,600
effective HSP length: 60
effective length of query: 24
effective length of database: 3,190,000
effective search space: 76560000
effective search space used: 76560000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)