BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135311.2 + phase: 0
(164 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9525 similar to UP|Q9AVS2 (Q9AVS2) Trypsin inhibitor precursor... 128 4e-31
TC17003 homologue to UP|Q40329 (Q40329) Serine proteinase inhibi... 117 1e-27
TC12319 similar to UP|IBB1_AMBAC (P83284) Bowman-birk type prote... 114 6e-27
AV418552 33 0.019
TC10144 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, part... 30 0.16
TC9755 UP|ATPA_LOTJA (Q9BBS3) ATP synthase alpha chain , complete 29 0.35
AV422734 29 0.35
TC15964 similar to UP|Q8S902 (Q8S902) Syringolide-induced protei... 29 0.46
AV406706 28 0.61
TC12178 similar to UP|P93557 (P93557) Mitotic cyclin, partial (27%) 28 0.61
TC9137 UP|CAF02297 (CAF02297) Cysteine-rich polycomb-like protei... 28 0.79
AV779391 28 0.79
TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fra... 28 0.79
TC15965 homologue to UP|Q8S902 (Q8S902) Syringolide-induced prot... 28 1.0
TC8154 28 1.0
AV409421 27 1.3
TC11806 27 1.8
AW163910 27 1.8
AV767542 27 1.8
BP028705 27 2.3
>TC9525 similar to UP|Q9AVS2 (Q9AVS2) Trypsin inhibitor precursor, partial
(85%)
Length = 547
Score = 128 bits (322), Expect = 4e-31
Identities = 68/118 (57%), Positives = 80/118 (67%), Gaps = 4/118 (3%)
Frame = +3
Query: 2 ELMNKNKKAMVMKLALLVFLLGFTSTVV-DARFDSTSFITQVISNGDSTTNNYDAKSTAT 60
E M NKK + M + LL+ LL FT+TVV DARFD SFITQV+ G TN Y KSTAT
Sbjct: 45 ETMEFNKKGL-MNVVLLLSLLAFTATVVVDARFDQNSFITQVLPKGTDDTNYY-VKSTAT 218
Query: 61 ACCNTCLC--SVTPELTQCRCADVGKTCHSACKNCECGWS-SPLCTCYDITDFCYKPC 115
ACC+ C C S+ P QC C+D+G+TCHSACK C C S P C C D+T+FCYKPC
Sbjct: 219 ACCDNCYCTKSIPP---QCHCSDIGETCHSACKTCICTRSFPPQCRCTDVTNFCYKPC 383
>TC17003 homologue to UP|Q40329 (Q40329) Serine proteinase inhibitor,
partial (53%)
Length = 523
Score = 117 bits (293), Expect = 1e-27
Identities = 66/114 (57%), Positives = 76/114 (65%), Gaps = 5/114 (4%)
Frame = +1
Query: 7 NKKAMVMKLALLVFLLGFTSTVV-DAR-FDSTSFITQVISNGDSTTNNYDAKSTATACCN 64
NK V +ALL+FLL FT+ VV DAR FD SFI QV+ G T+ Y KSTATACCN
Sbjct: 16 NKNGSV-NVALLLFLLAFTAAVVADARSFDPNSFIAQVLPKGTDDTSYY-VKSTATACCN 189
Query: 65 TCLC--SVTPELTQCRCADVGKTCHSACKNCECGWS-SPLCTCYDITDFCYKPC 115
+C C S+ P QCRC D+G+TCHSACK C C S P C C DIT+FCY PC
Sbjct: 190 SCPCTRSIPP---QCRCTDIGETCHSACKACICTRSIPPQCRCLDITNFCYDPC 342
>TC12319 similar to UP|IBB1_AMBAC (P83284) Bowman-birk type proteinase
inhibitor (TaTI), partial (83%)
Length = 655
Score = 114 bits (286), Expect = 6e-27
Identities = 59/117 (50%), Positives = 75/117 (63%), Gaps = 5/117 (4%)
Frame = +2
Query: 4 MNKNKKAMVMKLALLVFLLGFTSTVVDARFDSTS-FITQVISNGDSTTNNYDAKSTATAC 62
M NKK ++MK+ L+F LGFTST ARF S+S IT+++SN NY KST AC
Sbjct: 14 MEVNKKGLIMKVVFLLFFLGFTSTATSARFHSSSNLITELLSN----NGNYHVKSTTAAC 181
Query: 63 CNTCLC--SVTPELTQCRCADVGKTCHSACKNCECGWSS--PLCTCYDITDFCYKPC 115
C+TC C S+ P QC+ D+ TCHSAC++C C + S P C DITDFCY+PC
Sbjct: 182 CDTCSCTKSIPP---QCK*QDIRLTCHSACESCVCPYESLPPKCIYLDITDFCYEPC 343
>AV418552
Length = 386
Score = 33.5 bits (75), Expect = 0.019
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 4/59 (6%)
Frame = -3
Query: 61 ACCNTCLCSVTPELTQCRCADVGKTCHS----ACKNCECGWSSPLCTCYDITDFCYKPC 115
+CC +C+C C CA +C S +C +C C WSS C+C C C
Sbjct: 318 SCCWSCVC*CC---VSCSCASCCWSCASCCCWSCVSC-CCWSSVSCSCESCCWSCASCC 154
Score = 28.9 bits (63), Expect = 0.46
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 57 STATACCNTCLCSVTPELTQCRCADVGKTCHSACKNCECGWSSPLCTC 104
S A+ CC +C+ C C ++C +C +C C WS C+C
Sbjct: 255 SCASCCCWSCVSCCCWSSVSCSC----ESCCWSCASC-CCWSC-CCSC 130
>TC10144 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (8%)
Length = 600
Score = 30.4 bits (67), Expect = 0.16
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 57 STATACCNTCLCSVTPELTQCRCADVGKTCHSACKNCECGWSSPL 101
S T CC TC C CA G TC C CG S L
Sbjct: 175 SGGTCCCGTCCCG---------CASCGSTCGCCC----CGSVSSL 80
>TC9755 UP|ATPA_LOTJA (Q9BBS3) ATP synthase alpha chain , complete
Length = 2005
Score = 29.3 bits (64), Expect = 0.35
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = +3
Query: 47 DSTTNNYDAKSTATACCNTCLCSVTPELTQC 77
+S+++ YD++ST T CN CLCS + C
Sbjct: 528 NSSSHRYDSQSTRTK-CNMCLCSCWSKSIVC 617
>AV422734
Length = 448
Score = 29.3 bits (64), Expect = 0.35
Identities = 15/51 (29%), Positives = 18/51 (34%), Gaps = 2/51 (3%)
Frame = -3
Query: 56 KSTATACCNTCLCSVTPELTQCRCADVGKTCHSACK--NCECGWSSPLCTC 104
+ A ACC C C C C + K C C + C W C C
Sbjct: 242 REIAAACCCCCCCF-------CNCCNSRKCCCCCCCC*SISCCWCC*CCCC 111
>TC15964 similar to UP|Q8S902 (Q8S902) Syringolide-induced protein 19-1-5,
partial (27%)
Length = 401
Score = 28.9 bits (63), Expect = 0.46
Identities = 14/54 (25%), Positives = 24/54 (43%), Gaps = 1/54 (1%)
Frame = +3
Query: 86 CHSACKNCE-CGWSSPLCTCYDITDFCYKPCNVWQQQQKVQVVVTIVLAQDHSH 138
CH C NC+ C S+P C+D+ + W +Q ++ + +H H
Sbjct: 180 CH--CNNCKSCNSSAPNSICHDLLNPTLVTATHWMRQSSNCKMMFLTQLNEHKH 335
>AV406706
Length = 433
Score = 28.5 bits (62), Expect = 0.61
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -3
Query: 63 CNTCLCSVTPELTQCRCADVGKTCHSACKNCECGWSSP 100
CN LC CRC ++ +T A + CE W+SP
Sbjct: 296 CNRRLC--------CRCLELHQTEKRANRGCEWLWTSP 207
>TC12178 similar to UP|P93557 (P93557) Mitotic cyclin, partial (27%)
Length = 554
Score = 28.5 bits (62), Expect = 0.61
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 5/44 (11%)
Frame = +3
Query: 66 CLCSVTPELTQCRCADVGKTCHSACKNCE-----CGWSSPLCTC 104
CLCS T C+C +C S K E CGW+S C C
Sbjct: 264 CLCSTT-----CQCT----SCSSC*KQQETGLS*CGWTSCSCCC 368
>TC9137 UP|CAF02297 (CAF02297) Cysteine-rich polycomb-like protein, complete
Length = 3086
Score = 28.1 bits (61), Expect = 0.79
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = +1
Query: 88 SACKNCECGWSSPL---CTCYDITDFCYKPCN 116
+ CK C C S L C C+ FC PC+
Sbjct: 1576 NGCKRCNCKKSKCLKLYCDCFAAGVFCLDPCS 1671
>AV779391
Length = 498
Score = 28.1 bits (61), Expect = 0.79
Identities = 13/39 (33%), Positives = 16/39 (40%), Gaps = 1/39 (2%)
Frame = -3
Query: 64 NTCLCSVTPELTQ-CRCADVGKTCHSACKNCECGWSSPL 101
N C C +T TQ C C AC N C +P+
Sbjct: 340 NRCSCQITTPSTQACHCT*FPSLSKEACNNWNCRIRNPI 224
>TC15540 similar to UP|Q9NGS5 (Q9NGS5) Prespore protein MF12 (Fragment),
partial (6%)
Length = 806
Score = 28.1 bits (61), Expect = 0.79
Identities = 13/43 (30%), Positives = 16/43 (36%)
Frame = -3
Query: 62 CCNTCLCSVTPELTQCRCADVGKTCHSACKNCECGWSSPLCTC 104
CCN C C C G C ++C C W+ C C
Sbjct: 204 CCNCGSCCCGCSCESCCC*S*GSCCCCIWESC-CCWTCGSCCC 79
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/40 (32%), Positives = 14/40 (34%), Gaps = 5/40 (12%)
Frame = -3
Query: 62 CC--NTCLCSVTPELTQCRC---ADVGKTCHSACKNCECG 96
CC +C C C C G C S C C CG
Sbjct: 129 CCIWESCCCWTCGSCCCCCCWSWVSCGGCCCSCCCCCSCG 10
>TC15965 homologue to UP|Q8S902 (Q8S902) Syringolide-induced protein 19-1-5,
partial (86%)
Length = 1021
Score = 27.7 bits (60), Expect = 1.0
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 90 CKNC-ECGWSSPLCTCYDITDFCYKPCNVWQQQQKVQVVVTIVLAQDHSH 138
C NC C S+P TC D+ + W +Q ++ + +H H
Sbjct: 870 CNNCISCNSSAPKATCLDLLNPTLVTATHWMRQSWNCKMMFLTQLNEHKH 721
>TC8154
Length = 503
Score = 27.7 bits (60), Expect = 1.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -2
Query: 71 TPE--LTQCRCADVGKTCHS---ACKNCECGWSSPLCT 103
TPE + C DVG + +S +C C WSSP C+
Sbjct: 328 TPESNVEVCDIGDVGASLYSVFTSCFLCSYSWSSPWCS 215
>AV409421
Length = 412
Score = 27.3 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 15/30 (49%), Gaps = 3/30 (10%)
Frame = +2
Query: 90 CKNCECGWSSPL---CTCYDITDFCYKPCN 116
CK C C S L C C+ +C +PC+
Sbjct: 296 CKRCNCKKSKCLKLYCECFAAGVYCIEPCS 385
>TC11806
Length = 507
Score = 26.9 bits (58), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 130 IVLAQDHSHLIVLVMMLNHFVTQIASL 156
+++ DH+HLI + L HFV I ++
Sbjct: 152 LIII*DHNHLITIYTFLQHFVIVIINM 72
>AW163910
Length = 297
Score = 26.9 bits (58), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 88 SACKNCECGWSSPLCTCYDITDFCYK 113
S+ K C CGWS +C IT C++
Sbjct: 208 SSTK*CWCGWSFSCSSCPPITVKCFQ 285
>AV767542
Length = 501
Score = 26.9 bits (58), Expect = 1.8
Identities = 23/59 (38%), Positives = 28/59 (46%), Gaps = 2/59 (3%)
Frame = -2
Query: 44 SNGDSTTNNYDAKSTATAC--CNTCLCSVTPELTQCRCADVGKTCHSACKNCECGWSSP 100
SNG T + S AT+C CN SV P T+ CADVG A + CG + P
Sbjct: 260 SNG*RTRARSSSCSRATSCPTCNRA-SSVFP--TRANCADVGLADDEAW-SFSCGCAGP 96
>BP028705
Length = 474
Score = 26.6 bits (57), Expect = 2.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 66 CLCSVTPELTQCRCADVGKTCHSACKNC 93
CL V P+ + C+C + +T ++ +NC
Sbjct: 391 CLRLVVPKGSTCKCLSIKETIRTSFENC 474
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.131 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,725,997
Number of Sequences: 28460
Number of extensions: 72812
Number of successful extensions: 726
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of query: 164
length of database: 4,897,600
effective HSP length: 83
effective length of query: 81
effective length of database: 2,535,420
effective search space: 205369020
effective search space used: 205369020
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC135311.2