TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135234.2 - phase: 0 /pseudo
         (1380 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)        97  2e-27
BP054462                                                               59  4e-09
BP085845                                                               56  3e-08
AU089582                                                               56  4e-08
BP046863                                                               47  3e-05
BP038802                                                               29  5.8
TC9035 similar to UP|Q9FLZ8 (Q9FLZ8) Emb|CAB87751.1 (AT5g39360/M...    28  7.5
BI420650                                                               28  9.8

>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
          Length = 519

 Score = 96.7 bits (239), Expect(2) = 2e-27
 Identities = 47/79 (59%), Positives = 61/79 (76%)
 Frame = +3

Query: 1240 RVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYV 1299
            RV+PM GV R  K  KL+P+FIGP+++ ERVG+V+YR+ LPP LS +H VFHVS LRKY+
Sbjct: 3    RVSPMKGVLRFGKKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRKYL 182

Query: 1300 PDPSHVIHKGDVQVRDNLT 1318
             DPSHVI   DVQ+  +L+
Sbjct: 183  YDPSHVIRHEDVQLDVHLS 239



 Score = 44.3 bits (103), Expect(2) = 2e-27
 Identities = 18/34 (52%), Positives = 23/34 (66%)
 Frame = +2

Query: 1337 KEIPLVRVVWGGATGESLTWELESKMRESYPELF 1370
            K++  V+V+W G +GE  TWE E  MRE YP LF
Sbjct: 296  KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHLF 397


>BP054462 
          Length = 422

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/64 (48%), Positives = 43/64 (66%), Gaps = 1/64 (1%)
 Frame = +1

Query: 1234 GDHVFLRVTPMTGVGRALK-SKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
            GD VFL++ P      A K ++KL+P++ GPY I  ++G VAYR+ LP H S +H VFHV
Sbjct: 232  GDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAYRLELPAH-SRVHPVFHV 408

Query: 1293 SQLR 1296
            S L+
Sbjct: 409  SLLK 420


>BP085845 
          Length = 464

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 35/106 (33%), Positives = 56/106 (52%)
 Frame = -2

Query: 1252 KSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHVIHKGDV 1311
            K +K   K IGP++I E V  +AY +    +L   H V HV+ L + + D S  I    V
Sbjct: 421  KKRKTESKIIGPFKILEMVCLIAY*LTHSLYLLAAHIVLHVTLLWRNLYDQSQNICHEGV 242

Query: 1312 QVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWE 1357
             + ++ +    P+ + D KV+ +R K I  V+V+W G +G   +WE
Sbjct: 241  XLGEHWSHMEHPIVMVDMKVRCMRPKNIDDVKVIWRGLSG*EKSWE 104


>AU089582 
          Length = 383

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 27/63 (42%), Positives = 36/63 (56%)
 Frame = +1

Query: 1076 CEVAWCSVEYCVG*RSEVHF*ILEEFARCFGFEIEAEFGLSSSDRWSVGEDDTIFRGSTE 1135
            C +AWC+  Y    RS +H   LE F+ CFG  I+ E+  SSS+ WSV ED +  RG   
Sbjct: 46   CFLAWCTCVYNFRSRSSIHITFLEVFSNCFGNSIKNEYRFSSSN*WSVREDYSDLRGYAS 225

Query: 1136 SVC 1138
             +C
Sbjct: 226  CLC 234


>BP046863 
          Length = 580

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +1

Query: 1234 GDHVFLRVTPMTGVGRAL-KSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 1292
            G+ VFL++ P      A  K++KL+P+F GP+++ ERV  VAY + L    S +H VFH+
Sbjct: 388  GNWVFLKLQPYKLQNLAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSE-SRVHPVFHL 564

Query: 1293 SQLRK 1297
            S L K
Sbjct: 565  SLLEK 579


>BP038802 
          Length = 533

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 584 FFMLFWIDSWWCLLMIF*FI 603
           FF  FW+   W LL +F*FI
Sbjct: 414 FFFFFWVGVIWVLLTVF*FI 355


>TC9035 similar to UP|Q9FLZ8 (Q9FLZ8) Emb|CAB87751.1 (AT5g39360/MUL8_40),
            partial (34%)
          Length = 593

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 1136 SVCT*ARWSLG*SPTVDRVHIQQ*LPFEYWYDTVRSFVCSKVQNSFVL--V*VGRKCDVG 1193
            SVCT        + +V +VHIQ  +    WY+ V S+   ++    +L  + +G+KC  G
Sbjct: 560  SVCT--------TKSVTQVHIQTSI*MVTWYNKVYSYNLYQIH*EKML*NIVLGKKCCHG 405

Query: 1194 TRH 1196
             RH
Sbjct: 404  LRH 396


>BI420650 
          Length = 576

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (47%)
 Frame = +2

Query: 445 CRWHHIVCQHRSWLN*RNSWKTCLIRSL*NRVSRRGERL 483
           C  HH VC H  W+ *   W   ++ +L  R+  + + L
Sbjct: 452 CCTHHWVCWHWVWVE*EEPWLHLVLTNLMRRIQLKQKLL 568


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.369    0.167    0.626 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,223,259
Number of Sequences: 28460
Number of extensions: 359323
Number of successful extensions: 4510
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2460
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 1949
Number of HSP's gapped (non-prelim): 2778
length of query: 1380
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1278
effective length of database: 1,994,680
effective search space: 2549201040
effective search space used: 2549201040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 61 (28.1 bits)