TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135233.1 + phase: 0 
         (87 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11629 similar to UP|Q9SG17 (Q9SG17) T1G12.2 protein, partial (...    86  9e-19
TC14851 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, par...    24  5.4
TC17674 similar to GB|CAB79832.1|7270016|ATCHRIV74 1, 3-beta-glu...    24  5.4
BF177485                                                               23  7.1
AV424192                                                               23  9.2

>TC11629 similar to UP|Q9SG17 (Q9SG17) T1G12.2 protein, partial (16%)
          Length = 607

 Score = 86.3 bits (212), Expect = 9e-19
 Identities = 39/56 (69%), Positives = 48/56 (85%)
 Frame = -2

Query: 31  RFESRKALPSQWRGLRDDILSKESGIPGCVFVHMSGFIGGNQTFEGALAMAKAALK 86
           RFESRK LP  WRGL +D LS+  GIPGC FVHM+GFIGGN++++GALAMA+A+LK
Sbjct: 603 RFESRKPLPYLWRGLENDKLSEIDGIPGCTFVHMNGFIGGNRSYDGALAMARASLK 436


>TC14851 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (47%)
          Length = 708

 Score = 23.9 bits (50), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 38  LPSQWRGLRDDILSKESGIPGCVFVH 63
           LP QW G  D+  S +  I GC  ++
Sbjct: 339 LPRQW*GC*DEARSCKRNIEGCYMIN 416


>TC17674 similar to GB|CAB79832.1|7270016|ATCHRIV74 1, 3-beta-glucanase-like
           protein {Arabidopsis thaliana;}  , partial (21%)
          Length = 850

 Score = 23.9 bits (50), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 15  ERSKQWRVQAVSVSPDRF 32
           +RS  WR+Q  +  PDRF
Sbjct: 294 QRSFNWRLQVQNHDPDRF 347


>BF177485 
          Length = 334

 Score = 23.5 bits (49), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 16 RSKQWRVQAVSVSPDRFESRKALPSQWRG 44
          RSK  + Q+  VSP  +ESR      W G
Sbjct: 30 RSKSTQHQSHVVSPKDYESRPHREDWWHG 116


>AV424192 
          Length = 407

 Score = 23.1 bits (48), Expect = 9.2
 Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
 Frame = -2

Query: 33  ESRKALPSQWR--GLRDDILSKESGIPGCVFVHMS 65
           E RK++  + R  G+RD +L  E  + GC F H++
Sbjct: 106 EKRKSIEERSRSNGMRDLVL**ELRV*GCEFWHLT 2


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,470,015
Number of Sequences: 28460
Number of extensions: 15725
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of query: 87
length of database: 4,897,600
effective HSP length: 63
effective length of query: 24
effective length of database: 3,104,620
effective search space: 74510880
effective search space used: 74510880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)