BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135232.5 + phase: 0
(812 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18654 homologue to UP|Q8GZU9 (Q8GZU9) Ribonucleotide reductase... 474 e-134
AV769443 152 2e-37
TC18393 similar to UP|Q9ZR57 (Q9ZR57) Ribonucleotide reductase ... 43 2e-04
AV410480 29 3.4
TC9061 similar to UP|Q8VYV6 (Q8VYV6) AT5g54510/F24B18_13, partia... 29 3.4
BI418407 28 5.8
TC16084 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H... 28 7.6
TC14891 27 9.9
TC7936 similar to UP|Q9SP53 (Q9SP53) Flavanone 3-hydroxylase, pa... 27 9.9
>TC18654 homologue to UP|Q8GZU9 (Q8GZU9) Ribonucleotide reductase large
subunit A, partial (31%)
Length = 753
Score = 474 bits (1220), Expect = e-134
Identities = 226/250 (90%), Positives = 240/250 (95%)
Frame = +2
Query: 329 FYALWVPDLFMERVQSNGEWSLFCPNEAPGLADCWGEEYDKLYTQYEKAGKAKKIVQAQS 388
FYALW+ DLFMERVQSNG WSLFCPNEAPGLADCWGEE++KLYT+YE+ GKAKK+V+AQ+
Sbjct: 2 FYALWLSDLFMERVQSNGHWSLFCPNEAPGLADCWGEEFEKLYTKYEREGKAKKVVEAQN 181
Query: 389 LWFAILKSQIETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLAS 448
LWF ILKSQIETGNPYMLFKD CNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLAS
Sbjct: 182 LWFEILKSQIETGNPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLAS 361
Query: 449 IALPRYVRDKGLPVESHQSKLVGSRGSSSRYFDFEKLGEVTAVVTTNLNKIIDVNYYPVE 508
IALPRYVRDKG+P+ESH +KLVGS GS +RYFDF+KLGEVTA VTTNLNKIIDVNYYPVE
Sbjct: 362 IALPRYVRDKGVPMESHPTKLVGSLGSKNRYFDFDKLGEVTATVTTNLNKIIDVNYYPVE 541
Query: 509 TAERSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKTSCELAAK 568
A+RSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKTSCELAAK
Sbjct: 542 NAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKTSCELAAK 721
Query: 569 EGPYETYSGS 578
EGPYETYSGS
Sbjct: 722 EGPYETYSGS 751
>AV769443
Length = 546
Score = 152 bits (384), Expect = 2e-37
Identities = 73/88 (82%), Positives = 83/88 (93%)
Frame = -1
Query: 725 QSLNIHMDKPNFGKLTSLHFYAWSKGLKTGMYYLRTRAASDAIKFTVDTSAIKDQPKVKE 784
QSLNIHM++PNFGKLTSLHFYAWSKGLKTGMYYLRTRAA+DAIKFTVDT+AIKD+PKV
Sbjct: 546 QSLNIHMEQPNFGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTAAIKDKPKV-- 373
Query: 785 ADDEDDDTKMAQMVCSLTNRDECEACGS 812
+EDD+TKMAQMVCSLTN+++C ACGS
Sbjct: 372 --EEDDNTKMAQMVCSLTNQNKCLACGS 295
>TC18393 similar to UP|Q9ZR57 (Q9ZR57) Ribonucleotide reductase
(Ribonucleoside-diphosphate reductase large chain) ,
partial (4%)
Length = 464
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1
Query: 789 DDDTKMAQMVCSLTNRDECEACGS 812
D DTKMAQ+VCSLTN +EC ACGS
Sbjct: 31 DVDTKMAQVVCSLTNPEECLACGS 102
>AV410480
Length = 420
Score = 28.9 bits (63), Expect = 3.4
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -1
Query: 593 TPSNLWDWGALREMIS 608
TP+N+W WG L E IS
Sbjct: 258 TPTNIWGWGKLNESIS 211
>TC9061 similar to UP|Q8VYV6 (Q8VYV6) AT5g54510/F24B18_13, partial (27%)
Length = 819
Score = 28.9 bits (63), Expect = 3.4
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +2
Query: 406 LFKDACNRKSNQQNLGTIKSSNLC 429
LF +C ++ NL T+KS+NLC
Sbjct: 659 LFSSSCYNLHSELNLATVKSNNLC 730
>BI418407
Length = 422
Score = 28.1 bits (61), Expect = 5.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 160 QGVVVERPQHMIMRVSVGIHKDDVESA 186
+ ++V PQH++ + + IHKDD+ A
Sbjct: 418 RSIIVHEPQHVLKQDVIHIHKDDLPLA 338
>TC16084 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;}, partial (29%)
Length = 889
Score = 27.7 bits (60), Expect = 7.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAVISKSAGGIGVSVH 253
+ P+ +A TPR LS F+ D I ++L+ +++ GIGVS+H
Sbjct: 573 SQPSTNHARTPRLSLSKNFI-----DEFLSIGNSLRTTHKLNQPIRGIGVSIH 430
>TC14891
Length = 1172
Score = 27.3 bits (59), Expect = 9.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 422 TIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVRDKGLPVESHQSKLVGSRGSSSRY 479
TI + LC+E+ + SP + + LPR D GL HQ G S +R+
Sbjct: 90 TIPHAVLCSEMGAHFSPCGRFLAACVACMLPRIEADPGLQAPVHQES--GLSNSPTRH 257
>TC7936 similar to UP|Q9SP53 (Q9SP53) Flavanone 3-hydroxylase, partial
(94%)
Length = 1492
Score = 27.3 bits (59), Expect = 9.9
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 5/51 (9%)
Frame = +3
Query: 62 ETAAGMTANHPDYASLAARIAVSNLHKNTLKSF-----SETVKVMYNHFNH 107
+T + NHP AS + + +NTL+S E KV YN+F++
Sbjct: 105 QTNSETLTNHPTMASFKPKTLTTLAQQNTLESSFVRDEDERPKVAYNNFSN 257
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,418,572
Number of Sequences: 28460
Number of extensions: 174249
Number of successful extensions: 791
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of query: 812
length of database: 4,897,600
effective HSP length: 98
effective length of query: 714
effective length of database: 2,108,520
effective search space: 1505483280
effective search space used: 1505483280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC135232.5